Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o18
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   1.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   2.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   2.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   3.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   3.8  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   6.7  
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    23   6.7  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    23   8.9  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    23   8.9  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.9  

>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 53  LNNIYY*CSKSKIKLFRHVGSTIYQSVEKEGILKI 157
           L +++  C+K K+K+ RH+     QSV+ + IL+I
Sbjct: 215 LEDLFTGCTK-KMKISRHIIDASGQSVKADRILEI 248


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 166  GMFMKTINNKSIYNDMEYFRMNKQ*NIEK 252
            G+ ++T+N K++Y +   F ++ + ++EK
Sbjct: 3877 GLLLETMNQKNLYQNDVLFSLDAEISLEK 3905


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  SNCFATWVQQFISQLKRKEY*KLIVGYVYENY 185
           SN  A +V QF   + +KE+  LI G   EN+
Sbjct: 441 SNGIADFVFQFYEDVGKKEFTLLIEGIKCENF 472


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 256 FFFQYFIVYSF*STPY-HYIYFYYL 185
           F  Q FIVY F S P  H+++F++L
Sbjct: 138 FLSQIFIVY-FSSFPILHFLFFFFL 161


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 256 FFFQYFIVYSF*STPYHYIYFYYL 185
           F+F  F  +SF  T  H+ +F+ L
Sbjct: 112 FYFSLFSFFSFLFTSLHFNFFFRL 135


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 125

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 79 ATLIINVV*NISYQTQCQVIIH 14
          ATL + V+ N  Y+T   V+ H
Sbjct: 4  ATLTVRVIRNFEYRTLKNVVFH 25


>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 101 RHVGSTIYQSVEKEGILKINCWVCL 175
           R  G +IY  ++KEGI+ +   +C+
Sbjct: 73  RAEGRSIYGKLQKEGIICVATKLCI 97


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 89  FLICYINNKCCLKYFLSNTMSGY 21
           FL        C+ YF+ N  SGY
Sbjct: 263 FLSAAAGLAACILYFIGNLTSGY 285


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 243 ILLFIHSEVLHIIIYTFIIYSF 178
           + +F H  + H+++    IYSF
Sbjct: 174 VSIFSHQNLAHLLVNCVAIYSF 195


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 256 FFFQYFIVYSF*STPYHYIY 197
           + + YF  YSF  +PY + Y
Sbjct: 80  YIYIYFFFYSFLCSPYLFKY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,895
Number of Sequences: 5004
Number of extensions: 18547
Number of successful extensions: 41
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)