Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o13
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    28   1.3  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    27   1.7  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.3  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.3  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 76  PYPGSFTPMPPMEGNYPDHGD 138
           P P   +P PP+E N+PD  D
Sbjct: 289 PQPTGTSPSPPVEMNFPDTSD 309


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 613 FCACSTRSK*FQS*IQTTVPSL*SSVALPIPFPSRGLWWIGTRWASAWLNLIH 455
           F  C+ + K  +S +++  P+  SSV  PIP PSR      TR   A  +L+H
Sbjct: 2   FSPCTVKEK--RSTLRSVAPNPESSVIPPIPLPSRR---YKTRHIDALCSLMH 49


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 472 WLNLIHHRFRLVRTLSRLLRIPVL 401
           W N   HR  L+RT +R +RI  L
Sbjct: 172 WTNATRHRQALLRTQARRIRISSL 195


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 523 PFPSRGLWWIGTRWASAWLNLIHHRFRLVRTLSRLL 416
           P+P+  L  +   W   WL +    F + R ++RLL
Sbjct: 90  PYPNAKLGGVRIFWIFVWLEVAWGGFWVSRVIARLL 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,342
Number of Sequences: 5004
Number of extensions: 51585
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)