Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28o13
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 29 3.1
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 29 4.1
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 29 4.1
01_01_0387 + 2999222-2999495,2999834-2999934 28 5.5
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 28 7.2
03_05_0373 + 23581812-23583293 28 7.2
03_02_0724 - 10718756-10718931,10719008-10719233,10719330-107194... 28 7.2
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 27 9.6
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088... 27 9.6
>06_03_1333 -
29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Frame = +3
Query: 30 LYKKIQ--FQINGWICVSLSRVVY 95
+YK++Q F +N W+CVSL+ VY
Sbjct: 313 IYKEVQNHFDVNIWVCVSLNFNVY 336
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 553 SL*SSVALPIPFPSRGLWWIGTRWASAWLNLIHHRFRLVRT 431
SL SS+ +P + GL +GTR +S+W H + +R+
Sbjct: 798 SLPSSIRRALPVAAHGLLELGTRTSSSWHRSNHSENKYLRS 838
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 471 QADAQRVPIHHSPRDGNG-IGSATELHNDGT 560
Q + +P+H PRDG G G E H+ GT
Sbjct: 212 QCKEEPLPLHEPPRDGGGSAGEEEEEHDVGT 242
>01_01_0387 + 2999222-2999495,2999834-2999934
Length = 124
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 79 YPGSFTPMPPMEGNYPDHGDGMGVYYDN 162
YP PP G YP HG G Y N
Sbjct: 59 YPPQHGAYPPQHGAYPGHGYVPGAYPSN 86
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 221 RRTDLEAARDRNVVPNHDPNRTLGLGRYRERERSAGVHREAR 346
R + E R+R+ N D +R R RER+R REAR
Sbjct: 787 RERERERERERDRDQNRDRDRDQERDRDRERDRERESRREAR 828
>03_05_0373 + 23581812-23583293
Length = 493
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 149 TPIPSPWSG*LPSMGGMGV 93
TP SPW+ LP +GG GV
Sbjct: 72 TPPKSPWAAHLPGLGGGGV 90
>03_02_0724 -
10718756-10718931,10719008-10719233,10719330-10719400,
10719496-10719583
Length = 186
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 85 GSFTPMPPMEGNYPDHGDGMGVYYDNMNDGAE 180
G F + P G+YPD +Y DN +DG E
Sbjct: 135 GDFNDLEPQMGDYPD------IYGDNSSDGGE 160
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 245 RDRNVVPNHDPNRTLGLGRYRERERSA 325
RDR +P++ P RT R R+R+R A
Sbjct: 136 RDRRRIPDYHPRRTPSPHRDRDRDRHA 162
>08_02_1022 +
23707993-23708528,23708620-23708706,23708807-23708863,
23708955-23709261,23709545-23709631,23709720-23709767
Length = 373
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 27 LLYKKIQFQINGWICVSLSRVVYTHATHGGQLSRPWG-WNG 146
+L +Q ++G SL +V +H HG + PWG W+G
Sbjct: 296 VLLNSVQPVLSGKSKASLPQV--SHCIHGWKFGEPWGIWSG 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,607,783
Number of Sequences: 37544
Number of extensions: 383211
Number of successful extensions: 1076
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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