Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o12
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h at...   243   1e-64
AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein...   243   1e-64
AC024762-3|AAO91689.2|  133|Caenorhabditis elegans Vacuolar h at...   117   7e-27
Z79601-3|CAB01883.2|  640|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81575-7|CAB04638.1|  367|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL117195-7|CAB55028.1|  158|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z50756-3|CAI79214.1|  305|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoforma protein.
          Length = 384

 Score =  243 bits (594), Expect = 1e-64
 Identities = 113/194 (58%), Positives = 145/194 (74%)
 Frame = +2

Query: 140 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 319
           EYW+IS PG+K     WD LN +T  GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8   EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65

Query: 320 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIAD 499
             E V RK+ QY  EVLE+ + K+ ENL+  N D+ TY+T+FQW+ AKYP+KQSL+ +++
Sbjct: 66  SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125

Query: 500 IISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLT 679
           II KQ+ QID DLKVKS  YN LK  L ++++K  GSLLT++LADLVK + F+L+SEYL 
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQ 185

Query: 680 TLLVIVPKSMFNDW 721
           T++V+VPK    +W
Sbjct: 186 TVIVVVPKISVKEW 199


>AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein
           protein.
          Length = 384

 Score =  243 bits (594), Expect = 1e-64
 Identities = 113/194 (58%), Positives = 145/194 (74%)
 Frame = +2

Query: 140 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 319
           EYW+IS PG+K     WD LN +T  GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8   EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65

Query: 320 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIAD 499
             E V RK+ QY  EVLE+ + K+ ENL+  N D+ TY+T+FQW+ AKYP+KQSL+ +++
Sbjct: 66  SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125

Query: 500 IISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLT 679
           II KQ+ QID DLKVKS  YN LK  L ++++K  GSLLT++LADLVK + F+L+SEYL 
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQ 185

Query: 680 TLLVIVPKSMFNDW 721
           T++V+VPK    +W
Sbjct: 186 TVIVVVPKISVKEW 199


>AC024762-3|AAO91689.2|  133|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoformb protein.
          Length = 133

 Score =  117 bits (282), Expect = 7e-27
 Identities = 56/92 (60%), Positives = 65/92 (70%)
 Frame = +2

Query: 140 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 319
           EYW+IS PG+K     WD LN +T  GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8   EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65

Query: 320 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANN 415
             E V RK+ QY  EVLE+ + K+ ENL+  N
Sbjct: 66  SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGN 97


>Z79601-3|CAB01883.2|  640|Caenorhabditis elegans Hypothetical
           protein K09A9.1 protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 172 LVARGTDHPVFSHFHHKNLKINAVYNKLSETANNFGETTRQFGTSPST 29
           L+  G  +P+  H+H     ++ V  KL   AN+    T   GT P +
Sbjct: 579 LLLPGDIYPISEHYHPSQQPVDKVVYKLLSDANSLAFPTVMKGTVPKS 626


>Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical
           protein F35G12.10 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 431 YLTRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKVKSSAYNALKG 574
           YL   +   A++   Q L+ I D + KQV Q D   K   +A   LKG
Sbjct: 251 YLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKG 298


>Z81575-7|CAB04638.1|  367|Caenorhabditis elegans Hypothetical
           protein R08H2.8 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 263 VGTLDQLVGLSDDLGKLDTFVEGVTR 340
           VG  D + GL    GKL+ F+ GVT+
Sbjct: 161 VGQYDYITGLEGSSGKLNVFMGGVTK 186


>AL117195-7|CAB55028.1|  158|Caenorhabditis elegans Hypothetical
           protein Y57A10A.9 protein.
          Length = 158

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 103 VYNKLSETANNFGETTRQFGTSPST 29
           ++  L + A NF +TT+Q  TSPS+
Sbjct: 119 IFADLQKEAENFSKTTKQSSTSPSS 143


>Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical
           protein T07G12.5 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 311 LDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPT----YLTRFQWDMAKYPIKQ 478
           LD    G TR+   ++ E+ ED   +    +  N   LP+    +  R+ W +   P+  
Sbjct: 467 LDNITGGATRRQRGFVSEIDEDDDVEEQATVEMNGYALPSKLNQFFLRYSW-LTYLPVIP 525

Query: 479 SLRNIADIISK 511
           S R I +I  K
Sbjct: 526 SEREIREIEEK 536


>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +2

Query: 248 IPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLP 427
           + D+ + +  +L+GL  D  K DTF+  +T     +     ++   ++   +  N S L 
Sbjct: 101 LKDISMESSKELIGLGSDAFKYDTFIHNLTSVRDSFKFPGKDEYYAEVESVMKFNMSKLE 160

Query: 428 TYLTRFQ 448
             +  FQ
Sbjct: 161 DVMNEFQ 167


>Z50756-3|CAI79214.1|  305|Caenorhabditis elegans Hypothetical
           protein T08D10.4 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 184 LLTGLVARGTDHPVFSHFHHKNLKINAVYNK-LSETANNFGETTR 53
           +LT + +    + V  HFH K+LKI  + NK + E  N+    T+
Sbjct: 93  VLTSISSDLASNNVTEHFHDKSLKIEQMKNKTIRENDNSHNNQTQ 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,602,876
Number of Sequences: 27780
Number of extensions: 350010
Number of successful extensions: 1155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)