Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o09
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    29   0.60 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    28   1.4  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   2.4  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   7.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   7.4  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.7  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 303 SDKCEEDIKTHKETILAVLTPKQIESD 383
           SDKC   +K+HKE +L +L   Q E D
Sbjct: 133 SDKCLRRLKSHKERLLKLLEDAQKEYD 159


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 576 DMLTTMFKKEGILHTALECF 635
           D+L TM+KK G L  A +CF
Sbjct: 119 DVLGTMYKKAGFLKKATDCF 138


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 252 VKHVLHFSDDIGLNLI 299
           +KHV+H SDDIG  ++
Sbjct: 61  LKHVIHLSDDIGYRIL 76


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
 Frame = +3

Query: 294 LIYSDKCEEDIKTHKETILAVLTPKQIESDLASPIIIYENSQQDYYDSSNVFNVVNLKKS 473
           ++    C E I   KE IL +L  KQ E +     I YEN   D         +  L+ +
Sbjct: 307 VLIQGSCTEKILRFKEKILDLLEMKQQEENDRISHIEYEN---DLTVKKLKRRISELEMA 363

Query: 474 MEFFEIGFKSFLKETYWNRVAVISDTWAYSLMFQDML-TTMFKKEGILHTALECFENV 644
           ++ +E   KS+ ++ Y  +++ +       L   DML   + K+E   H+  E  E +
Sbjct: 364 VKEYE-SEKSYSEKEYEEKISSLRIELEDKLAEIDMLRNKLLKEEHKHHSTSEKLEEL 420


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 318 EDIKTHKETILAVLTPKQIESDLASPIIIYENSQQDYY 431
           E ++T+K  +L V   +   +++A+ II   + + DYY
Sbjct: 395 EYLQTYKNIVLVVSHDRSFLNEVATDIIHQHSERLDYY 432


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 177 NKKLSIDIDKKPNKVLICLNKFNVHVKHVLHFSDDIGLNLIYSDK-CE 317
           NKK  ++ + +   +++ LNKF    K ++   D    N+  S+K CE
Sbjct: 715 NKKNQLNGNDETQNLVLALNKFGCFAKEMVCLRDVNDWNIKLSEKLCE 762


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 390 SPIIIYENSQQDYYDSSNVFNVVNLKKSMEF 482
           SPI I   S Q YYD  + F  V L    EF
Sbjct: 217 SPISILMRSNQKYYDILSRFEDVQLVDISEF 247


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = +3

Query: 165 CGFPNKKLSIDIDKKPNKVLICLNKFNVHVKHVLHFSDDIGLNLIYSDKCEEDIKTHKET 344
           CG  ++ LSI     P  +L C N F   +  V    D + L L   D         KE 
Sbjct: 296 CGGQDRSLSIWSSALPRPLLSCQNVFQKSIGDVCWSPDGLSLFLCSYDGNVLVCTFEKEE 355

Query: 345 ILAVLTPKQIESDLA 389
              +++ ++I   LA
Sbjct: 356 FGDMVSDEEISKALA 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,848
Number of Sequences: 5004
Number of extensions: 55021
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)