Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o09
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0710 - 5830475-5830595,5831498-5834124                           30   1.4  
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533...    30   1.9  
10_02_0151 + 5895708-5895736,5896291-5896403,5897956-5898064,589...    29   2.5  
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067...    29   4.4  
06_03_0048 + 15959234-15959590,15959973-15960314                       29   4.4  
08_02_0136 - 13034434-13034991,13035999-13036034                       28   7.6  
06_01_0852 - 6483280-6484416                                           28   7.6  

>11_01_0710 - 5830475-5830595,5831498-5834124
          Length = 915

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 RKIAKLMTANIARMKELEQYICGFPN-KKLSIDIDKK 209
           R++  L  +N +R+K++ +YICG  N + L++ + +K
Sbjct: 169 RRLVHLNLSNCSRVKDVSEYICGLTNLEYLNLSVCRK 205


>08_02_0759 -
           20851828-20851932,20852190-20852285,20853231-20853314,
           20853411-20853481,20853568-20853655,20853745-20853936,
           20854044-20854931
          Length = 507

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 294 LIYSDKCEEDIKT-HKETILAVLTPKQIESDLASPIIIYENSQQD 425
           ++ SDK + D++T H   + AVL P    + + +PI +   S+ D
Sbjct: 82  VVESDKADMDVETFHDGIVAAVLVPAGESAPVGAPIALLAESEDD 126


>10_02_0151 +
           5895708-5895736,5896291-5896403,5897956-5898064,
           5898580-5898658,5898747-5898863,5900001-5900138
          Length = 194

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 225 ICLNKFNVHVKHVLHFSDDI-GLNLIYSDKCEEDIKTHKETILAVLTPKQIESDL 386
           +CLN      K VL+ +  I GLNL+++   +ED   H+   +    PK  E+++
Sbjct: 122 VCLNILREDWKPVLNINTVIYGLNLLFTQPNDEDPLNHEAAAVLRDNPKLFEANV 176


>08_02_0468 -
           17505905-17506002,17506295-17506424,17506662-17506778,
           17506881-17506959,17507546-17507654,17507857-17507969,
           17510510-17510570,17511562-17511742,17512903-17512960,
           17514292-17514497,17514582-17514671,17514752-17514813,
           17514911-17514979,17515330-17515334,17516282-17516454
          Length = 516

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 225 ICLNKFNVHVKHVLHFSDDI-GLNLIYSDKCEEDIKTHKETILAVLTPKQIESDL 386
           +CLN      K VL+ +  + GLNL++S   +ED   H+   +    P++ E ++
Sbjct: 414 VCLNILREDWKPVLNVNTIVYGLNLLFSQPNDEDPLNHEAAAVLRDNPEKFERNV 468


>06_03_0048 + 15959234-15959590,15959973-15960314
          Length = 232

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/61 (22%), Positives = 34/61 (55%)
 Frame = +3

Query: 366 KQIESDLASPIIIYENSQQDYYDSSNVFNVVNLKKSMEFFEIGFKSFLKETYWNRVAVIS 545
           ++I++   +PI+  +   +DY ++ N F+   L   +   +    +FL++T W+  +++S
Sbjct: 48  EEIQTSDCAPILFRDGLDEDYGNTLNYFSKKMLIVPLPPPDPMELAFLRQTVWDVTSIMS 107

Query: 546 D 548
           D
Sbjct: 108 D 108


>08_02_0136 - 13034434-13034991,13035999-13036034
          Length = 197

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 408 ENSQQDYYDSSNVFNVVNLKKSMEFFEIGFKSFLKETYWNRVAVISDTW 554
           ++  +DY ++ N F++      +   +     FLKET W   +++SD W
Sbjct: 69  DDLDEDYGNTLNYFSIKRPHIPLTPPDPIELQFLKETVWELTSIMSDEW 117


>06_01_0852 - 6483280-6484416
          Length = 378

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 108 IAKLMTANIARMKELEQYICGFPNKKLSIDIDKKPNKV 221
           + K++  N+A +++   ++C FP+ +L   + + PN V
Sbjct: 178 VEKVVKPNLALLQQCGIHVCDFPHTRLPTVLCRPPNHV 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,837
Number of Sequences: 37544
Number of extensions: 286741
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)