Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o09
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical...    32   0.42 
U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor prot...    30   1.7  
U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precurso...    30   1.7  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical
           protein C05C8.7 protein.
          Length = 467

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 288 LNLIYSDKCEEDIKTHKETILAVLTPKQIESDLASPIIIYENSQQDYY 431
           L+   S +C E +     TI A +TPK I+ D    ++ Y+ ++Q  Y
Sbjct: 277 LHAYLSGECVECVGCSNNTIRAAMTPKYIDRDALCSVLNYKMTEQKDY 324


>U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor protein
           10 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 363 PKQIESDLASPIIIYENSQQDYYDSSNVFNVVNLKKSMEFFEIGFKSFLKETYWNRV 533
           P   E+     +++YENS  D+ D  N   V +   ++   E G    L ETYW+ +
Sbjct: 219 PYLSEASCHLSVLLYENSYSDFGDDINPLVVSDWITTLLPLEEGSCPALFETYWHPI 275


>U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precursor
           protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 363 PKQIESDLASPIIIYENSQQDYYDSSNVFNVVNLKKSMEFFEIGFKSFLKETYWNRV 533
           P   E+     +++YENS  D+ D  N   V +   ++   E G    L ETYW+ +
Sbjct: 219 PYLSEASCHLSVLLYENSYSDFGDDINPLVVSDWITTLLPLEEGSCPALFETYWHPI 275


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 294 LIYSDKCEEDIKTHKETILAVLTPKQIESDLASPII-IYENSQQDYYDSSNVFNVVNLKK 470
           + Y    ++ IK      + +        DL +  + I++ +Q+ Y D  ++FN V L +
Sbjct: 269 VFYGKMAQKSIKAENPNTIQIYNSYGFSDDLLNEFLAIFDQNQRIYIDEKDLFNYVALYE 328

Query: 471 SMEFF 485
           S   F
Sbjct: 329 SFCVF 333


>Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical
           protein F47H4.7 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 108 IAKLMTANIARMKELEQYICGFPNKKLSIDIDKKPNKVLICLNKFNVHVKHVLHFSDDIG 287
           ++KL      +M+++ Q    F NK LSID++K   K+    +      K V++      
Sbjct: 270 MSKLGLEEKLKMRKVSQNFRNFMNK-LSIDVEKISLKIYNANSILQFDEKEVIYQDKKDD 328

Query: 288 LNLIYSDKCE 317
            NL+++D+ +
Sbjct: 329 CNLLFNDQAK 338


>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
           protein R06F6.4 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
 Frame = +3

Query: 303 SDKCEE-DIKTHKETILAVLTPKQIESD-------LASPIIIYENSQ-QDYYDSSNVFNV 455
           S +C+  D K HK    A+ T  ++ +D       +A  +   E+ + + YY      N 
Sbjct: 49  SQECQRADWKLHKVECKAIKTHNEVANDSIRLVMRIAGKLSRNEDGEIEAYYIPGVARNF 108

Query: 456 VNLKKSMEFFEIGFKSFLKETYWNRVAVISDTWAYSLMFQDMLTTMF 596
            NL+     ++   +SF+KE +   +A   D     L+FQ +    F
Sbjct: 109 QNLEHHPSSYDADEESFVKEYFQFAIAPHPDRDLIKLIFQKVSINSF 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,991
Number of Sequences: 27780
Number of extensions: 294983
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)