Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o06
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   0.58 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   0.77 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   1.0  
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    25   1.3  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    25   1.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    24   3.1  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    23   4.1  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    23   4.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    23   4.1  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    23   4.1  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    23   5.4  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    23   7.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.2  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    22   9.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    22   9.5  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    22   9.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    22   9.5  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    22   9.5  

>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 7   YQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLV 117
           Y   + E ER  +EK K+ED SA  +  + G   P+V
Sbjct: 158 YLQSVFEEERDTKEKAKIEDLSADVIMSDLGPPFPMV 194


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 22  DEYERLKEEKKKMEDESAGWVPK 90
           D+YE++KEE K++  E   ++ K
Sbjct: 192 DDYEKIKEENKRLYKERKSFLSK 214


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 22   DEYERLKEEKKKMEDESAGWVPKNSGGDI 108
            D   R K    KM D+S   VP+N G D+
Sbjct: 2633 DSVPRSKRNTGKMFDDSLELVPENLGNDL 2661


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 16  EIDEYERLKEEK-KKMEDESAG 78
           EIDEY   KEE+ KK E +++G
Sbjct: 44  EIDEYASKKEEEFKKSESQASG 65


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 34  RLKEEKKKMEDESAGWVPKNSGGDIPLVLNE 126
           RL +   ++E+E    +  NSG  + L++NE
Sbjct: 157 RLAKSNSRLENELQKLLEPNSGSQVGLIVNE 187


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +1

Query: 13  LEIDEYERLKEEKKKMEDESAGWVPK 90
           L+++  ++ +E +K+ME++   W P+
Sbjct: 876 LKLELEQKQRERRKEMEEKDIKWEPR 901


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  ERLKEEKKKMEDESAGWVPK 90
           +R +EE K+ E E+  W PK
Sbjct: 342 DRQREEAKQREIENVQWKPK 361


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 82  VPKNSGGDIPLVLNEPGKDV 141
           V + + G+I L + +PGKDV
Sbjct: 198 VVQTASGNIELAIMDPGKDV 217


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 224 LILDVVFLIYFIKTMQHTSASYQASCLVTSFPGSF 120
           +I  + FL+    T    +ASY++ C + S+  SF
Sbjct: 123 VIFSISFLLGISGTGPSLNASYKSLCKLYSYENSF 157


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 4   KYQLEIDEYE--RLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQE 153
           KY  EIDE E    K+EK+  ++ES     +     +  V  EP +DV  +E
Sbjct: 26  KYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSVSPVEEEP-RDVRFKE 76


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 16  EIDEYER-LKEEKKKMEDESAGW 81
           E  E ER L+EE++KM++E   W
Sbjct: 895 EKQERERQLQEERQKMQEEVLEW 917


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 46  EKKKMEDESAGWVP 87
           E+ ++   SAGWVP
Sbjct: 63  ERNRIHQSSAGWVP 76


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 131 EKM*QDKKPDMKLKYAAWF 187
           +K+ QD+KPD  L Y A F
Sbjct: 194 QKISQDQKPDSWLTYNAQF 212


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 169 EVCCMVLMKYIKKT 210
           E C   ++KY+KKT
Sbjct: 28  ETCSTYMLKYVKKT 41


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 112 KEYHHQNSLVPNQLTRLPFSF 50
           K+Y+H + +VP  L + P  F
Sbjct: 281 KKYYHMDCVVPPLLKKPPHGF 301


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 37  LKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTR 147
           LKE+ KK+EDE    +  +S   +   L    +++TR
Sbjct: 277 LKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITR 313


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 173 TSASYQASCLVTSFPGSFNTKGISPPEFFGTQP 75
           TSA+   S  V+S   S+NT  + P     + P
Sbjct: 392 TSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTP 424



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 173 TSASYQASCLVTSFPGSFNTKGISPPEFFGTQP 75
           TSA+   S  V+S   S+NT  + P     + P
Sbjct: 506 TSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTP 538


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 16  EIDEYERLKEEKKKMEDESA 75
           E+D+ E L +E+++ E+E A
Sbjct: 339 ELDDMEELTDEEEEDEEEEA 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,238
Number of Sequences: 5004
Number of extensions: 12188
Number of successful extensions: 52
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)