Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28o06
(226 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC029559-1|AAH29559.1| 213|Homo sapiens chromosome 14 open read... 34 0.094
AK096173-1|BAC04716.1| 213|Homo sapiens protein ( Homo sapiens ... 34 0.094
CR541816-1|CAG46615.1| 283|Homo sapiens RPP38 protein. 32 0.38
BC029494-1|AAH29494.1| 283|Homo sapiens ribonuclease P/MRP 38kD... 32 0.38
AL590365-13|CAH73969.1| 167|Homo sapiens ribonuclease P (38kD) ... 32 0.38
AL590365-12|CAH73968.1| 283|Homo sapiens ribonuclease P (38kD) ... 32 0.38
AL590365-11|CAH73967.1| 169|Homo sapiens ribonuclease P (38kD) ... 32 0.38
AK223418-1|BAD97138.1| 283|Homo sapiens ribonuclease P/MRP 38kD... 32 0.38
U77664-1|AAC51142.1| 283|Homo sapiens RNaseP protein P38 protein. 30 1.2
BC012745-1|AAH12745.1| 1297|Homo sapiens ribosomal RNA processin... 29 2.7
AL355490-8|CAI40776.1| 1197|Homo sapiens KIAA0690 protein. 29 2.7
AL355490-7|CAI40777.1| 1297|Homo sapiens KIAA0690 protein. 29 2.7
AB014590-1|BAA31665.1| 1214|Homo sapiens KIAA0690 protein protein. 29 2.7
D63477-1|BAA09764.1| 885|Homo sapiens KIAA0143 protein. 27 8.2
BC131486-1|AAI31487.1| 674|Homo sapiens KIAA0143 protein protein. 27 8.2
BC108667-1|AAI08668.1| 578|Homo sapiens KIAA0143 protein protein. 27 8.2
BC071611-1|AAH71611.1| 888|Homo sapiens KIAA0143 protein protein. 27 8.2
>BC029559-1|AAH29559.1| 213|Homo sapiens chromosome 14 open reading
frame 24 protein.
Length = 213
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +1
Query: 1 PKYQLEIDEYERLKEEKKKMEDES 72
PKYQ IDEY R+K+E+++ E+E+
Sbjct: 130 PKYQYAIDEYYRMKKEEEEEEEEN 153
>AK096173-1|BAC04716.1| 213|Homo sapiens protein ( Homo sapiens
cDNA FLJ38854 fis, clone MESAN2010664. ).
Length = 213
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +1
Query: 1 PKYQLEIDEYERLKEEKKKMEDES 72
PKYQ IDEY R+K+E+++ E+E+
Sbjct: 130 PKYQYAIDEYYRMKKEEEEEEEEN 153
>CR541816-1|CAG46615.1| 283|Homo sapiens RPP38 protein.
Length = 283
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 4 KYQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQE 153
K + +D E LKE+K + + +GW P + + + +NE + + R+E
Sbjct: 79 KCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRE 128
>BC029494-1|AAH29494.1| 283|Homo sapiens ribonuclease P/MRP 38kDa
subunit protein.
Length = 283
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 4 KYQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQE 153
K + +D E LKE+K + + +GW P + + + +NE + + R+E
Sbjct: 79 KCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRE 128
>AL590365-13|CAH73969.1| 167|Homo sapiens ribonuclease P (38kD)
(RPP38) protein.
Length = 167
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 4 KYQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQE 153
K + +D E LKE+K + + +GW P + + + +NE + + R+E
Sbjct: 79 KCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRE 128
>AL590365-12|CAH73968.1| 283|Homo sapiens ribonuclease P (38kD)
(RPP38) protein.
Length = 283
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 4 KYQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQE 153
K + +D E LKE+K + + +GW P + + + +NE + + R+E
Sbjct: 79 KCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRE 128
>AL590365-11|CAH73967.1| 169|Homo sapiens ribonuclease P (38kD)
(RPP38) protein.
Length = 169
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 4 KYQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQE 153
K + +D E LKE+K + + +GW P + + + +NE + + R+E
Sbjct: 79 KCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRE 128
>AK223418-1|BAD97138.1| 283|Homo sapiens ribonuclease P/MRP 38kDa
subunit variant protein.
Length = 283
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 4 KYQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQE 153
K + +D E LKE+K + + +GW P + + + +NE + + R+E
Sbjct: 79 KCSIAVDISENLKEKKTDAKQQVSGWTPAHVRKQLAIGVNEVTRALERRE 128
>U77664-1|AAC51142.1| 283|Homo sapiens RNaseP protein P38 protein.
Length = 283
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 4 KYQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQE 153
K + +D + LKE+K + + +GW P + + + +NE + + R+E
Sbjct: 79 KCSIAVDISDNLKEKKTDAKQQVSGWTPAHVRKQLVIGVNEVTRALERRE 128
>BC012745-1|AAH12745.1| 1297|Homo sapiens ribosomal RNA processing 12
homolog (S. cerevisiae) protein.
Length = 1297
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 16 EIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEP 129
E +E R KE++K S W+ K GGD PL +P
Sbjct: 1087 EEEERSRGKEQRKLARQRSRAWL-KEGGGDEPLNFLDP 1123
>AL355490-8|CAI40776.1| 1197|Homo sapiens KIAA0690 protein.
Length = 1197
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 16 EIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEP 129
E +E R KE++K S W+ K GGD PL +P
Sbjct: 987 EEEERSRGKEQRKLARQRSRAWL-KEGGGDEPLNFLDP 1023
>AL355490-7|CAI40777.1| 1297|Homo sapiens KIAA0690 protein.
Length = 1297
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 16 EIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEP 129
E +E R KE++K S W+ K GGD PL +P
Sbjct: 1087 EEEERSRGKEQRKLARQRSRAWL-KEGGGDEPLNFLDP 1123
>AB014590-1|BAA31665.1| 1214|Homo sapiens KIAA0690 protein protein.
Length = 1214
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 16 EIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEP 129
E +E R KE++K S W+ K GGD PL +P
Sbjct: 1004 EEEERSRGKEQRKLARQRSRAWL-KEGGGDEPLNFLDP 1040
>D63477-1|BAA09764.1| 885|Homo sapiens KIAA0143 protein.
Length = 885
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 200 IYFIKTMQHTSASYQASCLVTSFPGSFNTKGISP 99
I ++++ ++ Y+A +VT+ PGSF +SP
Sbjct: 498 IMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSP 531
>BC131486-1|AAI31487.1| 674|Homo sapiens KIAA0143 protein protein.
Length = 674
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 200 IYFIKTMQHTSASYQASCLVTSFPGSFNTKGISP 99
I ++++ ++ Y+A +VT+ PGSF +SP
Sbjct: 287 IMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSP 320
>BC108667-1|AAI08668.1| 578|Homo sapiens KIAA0143 protein protein.
Length = 578
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 200 IYFIKTMQHTSASYQASCLVTSFPGSFNTKGISP 99
I ++++ ++ Y+A +VT+ PGSF +SP
Sbjct: 498 IMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSP 531
>BC071611-1|AAH71611.1| 888|Homo sapiens KIAA0143 protein protein.
Length = 888
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 200 IYFIKTMQHTSASYQASCLVTSFPGSFNTKGISP 99
I ++++ ++ Y+A +VT+ PGSF +SP
Sbjct: 501 IMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSP 534
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,027,616
Number of Sequences: 237096
Number of extensions: 409488
Number of successful extensions: 1532
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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