Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o06
         (226 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical pr...    29   0.59 
U29244-16|AAQ23126.1|  172|Caenorhabditis elegans Hypothetical p...    27   1.4  
Z66512-1|CAA91322.1|  638|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U49830-1|AAK31483.1|  458|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z78419-6|CAB01704.1|  487|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    26   4.1  
Z83228-5|CAB05731.1|  148|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    25   7.2  
U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical p...    25   9.6  
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    25   9.6  
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    25   9.6  

>U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical
           protein T13C2.7 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 4   KYQLEIDEYERLKEEKKKMEDESAGWV 84
           K ++E+DEYER K + K+ + ++  W+
Sbjct: 86  KMRVEVDEYERRKIKMKEAKKKAQDWI 112


>U29244-16|AAQ23126.1|  172|Caenorhabditis elegans Hypothetical
           protein ZK1248.19 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 13  LEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLV 117
           LE DEY  L+E+      E    V +  GGD+ L+
Sbjct: 32  LEEDEYRELREDTVNQLQEYGKIVERLQGGDVSLI 66


>Z66512-1|CAA91322.1|  638|Caenorhabditis elegans Hypothetical
           protein F52H3.2 protein.
          Length = 638

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = +1

Query: 4   KYQLEIDEYERLKEEKKKMEDESAGWVPKNS 96
           +YQ+E   +ER+K +K++++ ESA  +P N+
Sbjct: 555 RYQME---HERMKAKKQEIDRESATAIPDNT 582


>U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical
          protein C33F10.4b protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +1

Query: 19 IDEYERLKEEKKKMED 66
          I++Y++LKEE KK++D
Sbjct: 31 IEKYQKLKEESKKLDD 46


>U49830-1|AAK31483.1|  458|Caenorhabditis elegans Hypothetical
          protein C33F10.4a protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +1

Query: 19 IDEYERLKEEKKKMED 66
          I++Y++LKEE KK++D
Sbjct: 31 IEKYQKLKEESKKLDD 46


>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
           protein ZK154.5 protein.
          Length = 1105

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 200 IYFIKTMQHTSASYQASCLVTSFPGSFNTKGISPPEFFGTQP 75
           +Y   T  H    Y+A+  +  +P   +TK + PP+F  T+P
Sbjct: 805 LYMDLTRIHRIKYYEANKTMNGYPIK-STKALGPPQFEKTKP 845


>Z78419-6|CAB01704.1|  487|Caenorhabditis elegans Hypothetical
           protein F26A3.6 protein.
          Length = 487

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 158 QASCLVTSFPGSFNTKGISPPEFFGT 81
           Q SCL+TS+PG+   +G   PE + T
Sbjct: 363 QRSCLITSYPGTI--EGYDLPEEYRT 386


>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 13  LEIDEYERLKEEKKKMEDESA 75
           LE +++ERL++E K  EDE A
Sbjct: 364 LEKEKHERLQQEAKDKEDERA 384


>Z83228-5|CAB05731.1|  148|Caenorhabditis elegans Hypothetical
           protein F52F12.5 protein.
          Length = 148

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 1   PKYQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLVLNEPGKDVTRQEA*YEAEVCC 180
           PK     +  E++K+E     +  A  V K +   +P + + PGK     E   ++  CC
Sbjct: 87  PKKNSAEESNEKIKKEGSVKVETVASKV-KPASSRVPPIASTPGKGSVDGEQKKKSTGCC 145

Query: 181 MVL 189
           ++L
Sbjct: 146 IIL 148


>Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical
           protein ZC410.4b protein.
          Length = 755

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 37  LKEEKKKMEDESAGWVPKNSGGDIPLVLNE 126
           L +EKKK+  E      KN+G ++P +L +
Sbjct: 444 LSKEKKKIAMEKVEVKAKNNGIEVPAILTD 473


>Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical
           protein ZC410.4a protein.
          Length = 769

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 37  LKEEKKKMEDESAGWVPKNSGGDIPLVLNE 126
           L +EKKK+  E      KN+G ++P +L +
Sbjct: 444 LSKEKKKIAMEKVEVKAKNNGIEVPAILTD 473


>Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B8.4 protein.
          Length = 307

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 224 LILDVVFLIYFIKTMQHTSASYQASCLVTSF 132
           L LD++ +   IK    + A+Y+   L++SF
Sbjct: 15  LFLDIILITLIIKKSSSSMANYKYLMLISSF 45


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 16  EIDEYERLKEEKKKMEDE 69
           E  EY+RLK+EK++ E E
Sbjct: 590 EYKEYKRLKKEKRRKERE 607


>Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical
           protein K08F4.5 protein.
          Length = 215

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 16  EIDEYERLKEEKKKMEDESAGWVPKNSGGD 105
           E +  E  KEE K+ E +++G   KNSG +
Sbjct: 99  EEERKEEKKEESKEGEKKNSGEEKKNSGDE 128


>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
           of males (increasedx chromosome loss) protein 1, isoform
           a protein.
          Length = 1281

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYERLK E  K ED++   + K  G
Sbjct: 179 EYERLKVEMTKAEDDTQHNMNKRRG 203


>U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical
           protein F42G9.1b protein.
          Length = 469

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 13  LEIDEYERLKEEKKKMEDESAGWVPKNSGGD 105
           ++ D++ R +E  K+++D      PK +GG+
Sbjct: 74  VDFDDFIRAEESMKELKDIGDEGKPKKAGGE 104


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 13  LEIDEYERLKEEKKKMEDESAGWVPKNSGGD 105
           ++ D++ R +E  K+++D      PK +GG+
Sbjct: 96  VDFDDFIRAEESMKELKDIGDEGKPKKAGGE 126


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 209 VFLIYFIKTMQHTSAS 162
           + LIYF+KTM+ ++AS
Sbjct: 239 IVLIYFLKTMKRSTAS 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,348,943
Number of Sequences: 27780
Number of extensions: 69603
Number of successful extensions: 357
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)