Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o06
         (226 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   0.61 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   3.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   3.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   4.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          19   5.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          19   5.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          19   5.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          19   5.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          19   5.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          19   5.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          19   5.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    19   5.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    19   5.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    19   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   7.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    19   9.9  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 0.61
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   KYQLEIDEYERLKEEKKKMEDE 69
           +Y+ +   YE+L  EKKK+ +E
Sbjct: 244 EYKKKDRRYEKLHNEKKKLLEE 265


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 7   YQLEIDEYERL 39
           +++ IDEYERL
Sbjct: 130 HKIAIDEYERL 140


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 152 SCLVTSFPGS 123
           SCLV  FPG+
Sbjct: 6   SCLVAPFPGA 15


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 4.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 1   PKYQLEIDEYERLKEEKKKMEDE 69
           PK+   IDEY     + KK  ++
Sbjct: 365 PKFPRNIDEYNNNDLDTKKWNNK 387


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYE  +  +KK+   S    P++ G
Sbjct: 62  EYELRRAREKKLSKRSKSRSPESRG 86


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYE  +  +KK+   S    P++ G
Sbjct: 62  EYELRRAREKKLSKRSKSRSPESRG 86


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYE  +  +KK+   S    P++ G
Sbjct: 62  EYELRRAREKKLSKRSKSRSPESRG 86


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYE  +  +KK+   S    P++ G
Sbjct: 62  EYELRRAREKKLSKRSKSRSPESRG 86


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYE  +  +KK+   S    P++ G
Sbjct: 62  EYELRRAREKKLSKRSKSRSPESRG 86


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYE  +  +KK+   S    P++ G
Sbjct: 62  EYELRRAREKKLSKRSKSRSPESRG 86


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYE  +  +KK+   S    P++ G
Sbjct: 62  EYELRRAREKKLSKRSKSRSPESRG 86


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 25  EYERLKEEKKKMEDESAGWVPKNSG 99
           EYE  +  +KK+   S    P++ G
Sbjct: 62  EYELRRAREKKLSKRSKSRSPESRG 86


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 178 CMVLMKYIKKTTSKIK 225
           CMV  KYI     K+K
Sbjct: 109 CMVARKYIDCALEKMK 124


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 178 CMVLMKYIKKTTSKIK 225
           CMV  KYI     K+K
Sbjct: 109 CMVARKYIDCALEKMK 124


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 122 FNTKGISPPEFFG 84
           F+T+G+ PP + G
Sbjct: 218 FDTEGLLPPVWVG 230


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 4   KYQLEIDEYERLKEEKKKMEDESAGWVPKNS 96
           KYQ +  +Y    +EK++   +S  +  KN+
Sbjct: 35  KYQWKYFDYNFGSDEKRQAAIQSGEYNYKNN 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,337
Number of Sequences: 438
Number of extensions: 778
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)