Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28o02
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1097 - 34095179-34095222,34095410-34095507,34096276-340963... 38 0.009
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 37 0.015
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 37 0.015
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 37 0.015
03_05_0152 + 21291162-21291287,21291379-21291479,21293257-212933... 36 0.026
09_02_0402 + 8582235-8582360,8582452-8582552,8584328-8584425,858... 36 0.035
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 28 5.3
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 5.3
>02_05_1097 -
34095179-34095222,34095410-34095507,34096276-34096376,
34096459-34096584
Length = 122
Score = 37.5 bits (83), Expect = 0.009
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +3
Query: 189 NGVKIQENTFGIRDPMIAGLG-ATRPKLGFVHPLEAS-EKNYHLNEEKLNLAMLRNVQGL 362
+G +++ G D + G+ + + L HPL+AS K+ +K + G
Sbjct: 3 SGGVVKKEIGGNHDVLRFGVNDSVKGDLAPPHPLQASVHKDAKFWADKKRFGA-EAIYGS 61
Query: 363 HAPMKITMERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILN 500
++ ++ + SK R P LPSS L ++ LTG D GFED LN
Sbjct: 62 AFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 36.7 bits (81), Expect = 0.015
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 279 HPLEAS-EKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLP-FLPSSNLQHD 452
HPL+AS K +K + G ++ ++ + SK R P LPSS L ++
Sbjct: 34 HPLQASVHKEAKFWADKKRFGA-EAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYE 92
Query: 453 VLTGRYIDIGFEDILN 500
LTG D GFED LN
Sbjct: 93 ALTGSLDDFGFEDYLN 108
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 36.7 bits (81), Expect = 0.015
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 279 HPLEAS-EKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLP-FLPSSNLQHD 452
HPL+AS K +K + G ++ ++ + SK R P LPSS L ++
Sbjct: 34 HPLQASVHKEAKFWADKKRFGA-EAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYE 92
Query: 453 VLTGRYIDIGFEDILN 500
LTG D GFED LN
Sbjct: 93 ALTGSLDDFGFEDYLN 108
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 36.7 bits (81), Expect = 0.015
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 279 HPLEAS-EKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLP-FLPSSNLQHD 452
HPL+AS K +K + G ++ ++ + SK R P LPSS L ++
Sbjct: 34 HPLQASVHKEAKFWADKKRFGA-EAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYE 92
Query: 453 VLTGRYIDIGFEDILN 500
LTG D GFED LN
Sbjct: 93 ALTGSLDDFGFEDYLN 108
>03_05_0152 +
21291162-21291287,21291379-21291479,21293257-21293354,
21294016-21294068,21295465-21295659,21295812-21296084
Length = 281
Score = 35.9 bits (79), Expect = 0.026
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 384 MERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQP--HAVIERS 554
++ + SK R P LPSS L ++ LTG D GFED LN ++ P H +E++
Sbjct: 69 LDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAPDMHHGMEKN 128
Query: 555 LGLL*LC 575
L + +C
Sbjct: 129 LLKIGIC 135
>09_02_0402 +
8582235-8582360,8582452-8582552,8584328-8584425,
8585089-8585151,8586540-8586721,8586874-8587146
Length = 280
Score = 35.5 bits (78), Expect = 0.035
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 384 MERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLG 560
++ + SK R P LPSS L ++ LTG D GFED LN ++ P + +
Sbjct: 69 LDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAPD--MHHGME 126
Query: 561 LL*LCASCKSYL 596
+L CK Y+
Sbjct: 127 VLLEIGICKKYI 138
>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 474 DIGFEDIL-NTRDLCETAGQPHAVIERSLG 560
++GF D N R L TAG HA +ER LG
Sbjct: 1227 EMGFFDTQENIRALIATAGNVHAAVERLLG 1256
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 390 RKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAV 542
R + +GRL L S NL + R + F D+L R+L + Q HA+
Sbjct: 343 RGLPAGIGRLAALESLNLSSNFSDMRDLPASFGDLLGLRELDLSNNQIHAL 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,399
Number of Sequences: 37544
Number of extensions: 294589
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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