Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28o02
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical ...    31   0.67 
Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z95619-2|CAB09114.1|  450|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical
           protein C49A9.8 protein.
          Length = 544

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 294 SEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSSNLQHDVLTGRYI 473
           ++ +Y LN +KL  A + N Q  +A   +    +FA++ G+LP L +     +++   +I
Sbjct: 451 TKPSYKLNAKKL--AEMLNNQPTNAKEVLVKHVEFAARFGKLPMLDNYGRHQNIVEYYFI 508

Query: 474 DI 479
           DI
Sbjct: 509 DI 510


>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
           protein H21P03.3b protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 144 SFGLPPLKVKPEHDDNGVKIQENTFGI 224
           S G    KV+ +HDD+GV + E T G+
Sbjct: 68  SEGAAAEKVEKQHDDDGVVVHEETDGV 94


>Z95619-2|CAB09114.1|  450|Caenorhabditis elegans Hypothetical
           protein H21P03.3a protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 144 SFGLPPLKVKPEHDDNGVKIQENTFGI 224
           S G    KV+ +HDD+GV + E T G+
Sbjct: 28  SEGAAAEKVEKQHDDDGVVVHEETDGV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,324
Number of Sequences: 27780
Number of extensions: 276720
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)