Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28n24
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 305 4e-84
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 161 9e-41
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 160 2e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 159 3e-40
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 29 0.52
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 28 1.2
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.7
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 26 6.4
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 6.4
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 6.4
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 8.5
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 8.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 305 bits (749), Expect = 4e-84
Identities = 138/197 (70%), Positives = 158/197 (80%)
Frame = +3
Query: 147 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 326
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 327 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 506
PRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 507 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 686
R+EAE CD LQGFQ KIREEYPDR+M TFSV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 687 EPYNATLSVHQLVXNTD 737
EPYNATLS+HQLV N+D
Sbjct: 181 EPYNATLSMHQLVENSD 197
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 161 bits (391), Expect = 9e-41
Identities = 79/199 (39%), Positives = 111/199 (55%), Gaps = 2/199 (1%)
Frame = +3
Query: 147 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER--INVYYNEASGGK 320
MREI+ I GQ G QIG WE+ EHGI G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 321 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 500
YVPR++ VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 501 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDT 680
+R+ A+ C LQGF ++ EY + FSV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 681 VVEPYNATLSVHQLVXNTD 737
VVEPYN+ L+ H + D
Sbjct: 181 VVEPYNSVLTTHATLDLAD 199
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 160 bits (388), Expect = 2e-40
Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 6/203 (2%)
Frame = +3
Query: 147 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER------INVYYNEA 308
MRE++ + GQ G QIG WE+ EHGI G + +S++ +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 309 SGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 488
GK+VPR++ VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 489 SVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPK 668
SVL+ +R+ A+ C LQGF ++ EY + FSV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 669 VSDTVVEPYNATLSVHQLVXNTD 737
VS +VVEPYN+ L+ H + N+D
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSD 203
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 159 bits (387), Expect = 3e-40
Identities = 71/199 (35%), Positives = 122/199 (61%), Gaps = 3/199 (1%)
Frame = +3
Query: 150 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYVP 329
REI+ +QAGQCGNQIG++FW+ + EHGI G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 330 RAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 503
RA+++DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 504 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVP-SPKVSDT 680
+ +EA+G D L+GF ++ + YP +I+ T+SV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 681 VVEPYNATLSVHQLVXNTD 737
VV+PYN+ L++ +L N D
Sbjct: 182 VVQPYNSLLALKRLTLNAD 200
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.5 bits (63), Expect = 0.52
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = -2
Query: 585 YQIQYLLPENELAENPADNRSLLLLF*LHPVPNQPVQPPLCNVLSPSYSPPQ---TVRRR 415
Y YL P +A +P N L H P P PL N +SP Y P R
Sbjct: 26 YTGPYLTPSGTMAYHPG-NAPLFTQAPPHTNPQGPPPFPLFNSISPVYDPATGRLLYRNV 84
Query: 414 SCPVGRFA-QTARNGRSPWFQAQGPPSQL 331
+ V A NG + + GPPSQL
Sbjct: 85 NTQVSHTAIPNPANGYAAVY--GGPPSQL 111
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 439 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 344
P+ PK L R I PNGPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 381 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 482
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 450 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 539
A+GH G ELV + D +RK++E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 579 IQYLLPENELAENPADNRSLL 517
+QY+L +NEL NP + ++L
Sbjct: 342 VQYILEQNELGRNPYNTTNVL 362
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 5 LIENFVCDATLVGKSLHFYINFFFYMIKFSKVFI*YSIRGFP 130
L +N+V T L +I F+ IK++ + +++R FP
Sbjct: 268 LFQNYVLQQTRKESKLWSFIKKVFHDIKYANYRLLHNLRAFP 309
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 6.4
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -1
Query: 172 AWMWTISLMIALKIWKPPNRI 110
AW+W ++LM+ ++ PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 559 LWEEVLDLVWGLF-*FPKSVKSIQIVL*IRF 648
LW V++++WGL F +V S++ ++ +RF
Sbjct: 98 LWFSVMNILWGLMTIFSFAVHSVRALMILRF 128
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 489 NQPVQPPLCNVLSPSYSPPQT 427
N+P +PP+ N + PPQT
Sbjct: 86 NEPAKPPIPNAATKPTFPPQT 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,617
Number of Sequences: 5004
Number of extensions: 67936
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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