Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n16
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    28   1.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    27   2.7  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    25   8.2  

>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 186 KNGTYICSAVILNTYWLATLSDCFDRAIISSYVTHKNLGNFAIRAGSSYNNK 341
           K   YI  AV L  ++LA++  C   AII  +  H N  NF++    SY  K
Sbjct: 62  KKHRYIYLAVCL--FFLASVLSC---AIIFRFYLHTNRENFSLFKNDSYKQK 108


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 155 YLCDRRSYSLFAVVFFS*FCFYFAINFAVD*Y 60
           YL +  S   F + +FS F  +FAI+F  + Y
Sbjct: 83  YLTEHSSRISFYICYFSIFLLFFAISFQAECY 114


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 522 VQ*VSKQSSMRGSQALLPDPDWADEPRPLAIQTPKGYQA*R 400
           VQ   KQ     +  L P+P   DEP  L+I+ P G +A R
Sbjct: 302 VQKKKKQYRAWLASNLPPEPSSEDEPARLSIRFPDGSRAVR 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,489
Number of Sequences: 5004
Number of extensions: 59176
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)