Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n16
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0680 - 27217563-27220088                                         28   8.5  
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    28   8.5  

>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 603 CVGGVXDPNRHFCRQDNGGAVIQND 677
           CVGG  D  R  C   NGG +  ND
Sbjct: 611 CVGGCSDSKRCACAVKNGGEIPFND 635


>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
 Frame = +3

Query: 429 GSQVDAARLPSPDQEVMLGYLASMTAWTPTGHIRLVNAP---VIDASICEEDARLLPGHY 599
           G   D+++LP  D   +   L   +    T +I +V A    ++DA    E AR      
Sbjct: 254 GLMKDSSKLPLFDLRKLNASLPVASVPNNTVNILVVGASSDFIVDAEGLSETARFYNVQP 313

Query: 600 ICVGGVXDPNRHFCRQDNGGAVI 668
           +C+ G+       C  D G  +I
Sbjct: 314 VCIEGIAHDMMLDCSWDKGAGII 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,501,694
Number of Sequences: 37544
Number of extensions: 400018
Number of successful extensions: 943
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)