Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n16
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.2  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 267 IISSYVTHKNLGNFAIRAGSSYNNKGGTIHKIKLLINNFDLKVSAVKLDIPLEFGS 434
           IISS   +    N+     ++YNN     +  KL   N+ + +  + + +P+  G+
Sbjct: 314 IISSLSNNYKYSNY--NNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGN 367


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 614 CSXSKQTFLQTRQRRRCDSKRY 679
           C   K   +  RQR RC   RY
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRY 167


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 614 CSXSKQTFLQTRQRRRCDSKRY 679
           C   K   +  RQR RC   RY
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRY 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,858
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)