Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28n13
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 31 0.20
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 30 0.27
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 30 0.35
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 29 0.47
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 28 1.4
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 27 1.9
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 27 2.5
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 26 4.4
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 5.8
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 5.8
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.6
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 7.6
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 7.6
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 7.6
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 7.6
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2
Query: 221 DDNIENLLSEYYKYLERAHKQQRAYENYK 307
DDN LL+ Y K +ERAHK ENYK
Sbjct: 760 DDNA--LLAAYSKVVERAHKADTWLENYK 786
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 30.3 bits (65), Expect = 0.27
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -1
Query: 194 HPLVHSR-YFLIHSLCLLC-H*KLWYRKMDLFRCH-SLLNY 81
HPL S+ Y L+ S CL C H KL K+ LF C LL+Y
Sbjct: 88 HPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLDY 128
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 IADIMNELENNVNVPADVSRDNES-EGDDNIENLLSEY 253
+ D E++ N+ A + +D+ES EG+ ++EN LSEY
Sbjct: 465 VVDSELEVDENLLEDATMIQDDESHEGESHLENSLSEY 502
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 29.5 bits (63), Expect = 0.47
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +2
Query: 47 AVLAGICKCESDSLEVNDIETSPFYDTIIFSDIADIMNELENNVNVPADVSRDNESEGDD 226
A++ + CE D + D + P +TI + N N + +PA++ E D+
Sbjct: 68 AIIQLLTSCEGDHWLMPDWSSMPDDETITEDSEEETFNGNANEITIPANIHIPIIEESDN 127
Query: 227 NIENLLSEYYK 259
N L +K
Sbjct: 128 ASNNKLCTLFK 138
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +2
Query: 293 YENYKSKNEIAFVPQQRQVKA-KASVKSGAYS-SNYDHPKYY--RYPYSQHGSFSLFWPS 460
YE + +A + R + K +V+ +S + P Y ++PY H S P+
Sbjct: 154 YETFNPDQNLAELSFDRSKSSRKRAVEVAEFSRAKTMSPLEYTVQHPYQSHNELSTN-PA 212
Query: 461 NQNGNYVPNLQRIPKSDV 514
VPNL RIP SDV
Sbjct: 213 RARAGSVPNLARIP-SDV 229
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Frame = +2
Query: 167 ENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQ-------RAYENYKSKNEIA 325
+ +V+ S D ES+ +D + LL E + ++Q RA E K + EIA
Sbjct: 146 QESVDSSNSESSDEESDSEDETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREIA 205
Query: 326 FVPQQRQVKAKASVKSGAYSSNYDHPKYYR 415
F ++ KAS S +D +R
Sbjct: 206 F---GNELLNKASSGSFQVKRRWDEDVVFR 232
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 140 DIADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYK 259
D+ ++ +NN NV D + ++ EG++ E+ E +K
Sbjct: 32 DVLSSSSDEDNNENVGQDYAEESGGEGNEKSEDEFEEKFK 71
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 238 VLNVIVSFTLIISANIRWYIHVIF*FIHYVCYVTKNYGIVKWTCF 104
++ +++SFT II N ++ Y KNYG V+WT F
Sbjct: 74 LIKLLISFTSIILFNAPAVC-----YLKYKDAFFKNYGAVEWTLF 113
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = +2
Query: 131 IFSDIADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKY 262
+++D+A+ ++E N +++ N+ G+D +NL+ K+
Sbjct: 693 VYNDLAESLHEQLNAYIQRKKINKKNQLNGNDETQNLVLALNKF 736
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 146 ADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQRAYE 298
AD+ +E ++ +PA+V R+ E + D + L + K ++ K+ E
Sbjct: 455 ADLDDEDPESMGIPANVDREVEDQDDLDYYESLDKKSKMAKKLRKENHDLE 505
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 395 DHPKYYRYPYSQHGSFSLF-WPSNQNGNY 478
D P +YP+S S F W SN N ++
Sbjct: 174 DVPSKKKYPHSMDAEISKFKWDSNNNNDW 202
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 7.6
Identities = 7/31 (22%), Positives = 19/31 (61%)
Frame = +2
Query: 143 IADIMNELENNVNVPADVSRDNESEGDDNIE 235
+ ++++E E N+++ D+S + DD ++
Sbjct: 876 VTELIDEAEENIDISQDISMTETNAVDDEVQ 906
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 7.6
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = +2
Query: 134 FSDIADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQRAYENYKSK 313
+ D++D+ +L N+ ++ NE DD E K ++AH Q K
Sbjct: 1611 YCDMSDLQRKLLNDFVSQLNI---NEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLC 1667
Query: 314 NEIAFVPQQRQVKAKASVKSGAYSSNYDH 400
N A + ++ K A VK A ++ H
Sbjct: 1668 NHPALILTEKHPKRNAIVKQLAKENSGLH 1696
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 238 VLNVIVSFTLIISANIRWYIHVIF*FIHYVCYVTKNYGIVKWTCF 104
++ +++SFT I N+ + ++ Y KNYG +WT F
Sbjct: 74 LIKLLISFTPIYVLNV-----LAICYLKYKDAFFKNYGAAEWTLF 113
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 497 IPKSDVSAYHDYGMQNKKSPSNEFKPIY--DWIQSQCYCKMNKVPCECDCKQCL 652
+P S V Y D + + N+FKPI+ S + K+ + CD ++C+
Sbjct: 31 VPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKLKRA---CDSQKCI 81
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 137 SDIADIMNELENNVNVPADVSRDNESEGDDNI-ENLLSE 250
SD DI N L+ P D++ DN+ + +N+ EN+ E
Sbjct: 7 SDEVDISNSLKA---FPVDIATDNQKDKHENVGENVSDE 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,889
Number of Sequences: 5004
Number of extensions: 55913
Number of successful extensions: 231
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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