Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28n13
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628... 33 0.16
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 33 0.28
06_03_0719 - 23845879-23845881,23846197-23846253,23846786-238470... 31 0.85
03_05_0696 - 26856413-26856416,26857917-26858524,26859041-268591... 31 1.1
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 30 1.5
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 29 4.5
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 29 4.5
12_02_1245 - 27308143-27308787,27308923-27308983,27309064-273094... 28 6.0
11_06_0690 + 26303733-26306540 28 6.0
09_03_0141 + 12704611-12704987,12707391-12707760 28 6.0
03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564... 28 7.9
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771... 28 7.9
>01_06_1200 -
35362412-35362432,35362526-35362715,35362799-35362899,
35362985-35363116,35363204-35363302,35363493-35363568,
35363649-35363941,35364032-35364160,35364332-35364480,
35364562-35364633,35364728-35364776,35365039-35365107,
35365201-35365256,35365357-35365429,35365508-35365584,
35365847-35365934,35366086-35366259,35366358-35366473,
35366681-35366984,35367084-35367146,35367224-35367286,
35367393-35367506,35368672-35368675,35368894-35368952,
35369024-35369098,35369691-35369798,35372331-35372792
Length = 1071
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/108 (25%), Positives = 51/108 (47%)
Frame = +2
Query: 128 IIFSDIADIMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQRAYENYK 307
++ S ++ E++ N VS+ +S DDN+E LL + +K + A K ++ +
Sbjct: 250 VVISSDESHYDDSESSENFFDGVSKYTDSSSDDNMEKLLLKIFK-KQIAKKMKKKF--IS 306
Query: 308 SKNEIAFVPQQRQVKAKASVKSGAYSSNYDHPKYYRYPYSQHGSFSLF 451
S +++ + + KAK VKS S + KY+R S +F
Sbjct: 307 SSSDV--FRKHKAKKAKGVVKSDGSFSRFS-AKYFRRVVSSLSPHQMF 351
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +2
Query: 125 TIIFSDIADIMNEL-----ENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQR 289
T ++S I IMN+ E V + ++ + ++L+ YYK H++
Sbjct: 161 TYLYSLIMPIMNKYISGLGEGKAMYLLFVKAETLTDSGIPVRSVLTSYYKSPHFLHRKHD 220
Query: 290 AYENYKSKNEIAFVPQQRQ 346
Y NY S +E+ P +Q
Sbjct: 221 LYNNYTSPDEVILCPDSQQ 239
>06_03_0719 -
23845879-23845881,23846197-23846253,23846786-23847011,
23847118-23847245,23847339-23847444,23847543-23847622,
23847773-23847870,23848015-23848128,23848239-23848379,
23849012-23849096,23849789-23850016
Length = 421
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 353 AKASVKSGAYSSNYDHPKYYRYPYSQHGSFSLFWPSNQNGNYVPNLQRIPKSDVSA 520
AK S S +YSS+YDH S++ ++ S+QN Y P+++ + + A
Sbjct: 3 AKDSKPSYSYSSSYDHGNSSSGYNSRYPAYPANASSSQNTRYAPSMENYVQPETHA 58
>03_05_0696 -
26856413-26856416,26857917-26858524,26859041-26859101,
26859181-26859557,26860314-26861156
Length = 630
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +2
Query: 119 YDTIIFSDIADIMNELENNVNVPADVSRDN--ESEGDDNIENLLSEYYKYLERAHKQQRA 292
Y + I+ L++ +N +V R E E E L+ +Y+++ +QQRA
Sbjct: 312 YTAVALQTISKHFRCLKDAINDQINVIRKKLGEEESSSGKEGKLTRL-RYIDQQLRQQRA 370
Query: 293 YENYKSKNEIAFVPQQRQVKAKASVKSGAYSSNYDHP 403
++ Y + A+ PQ+ + S+ ++ HP
Sbjct: 371 FQQYGLLQQNAWRPQRGLPENSVSILRAWLFEHFLHP 407
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 545 KKSPSNEFKPIYDWIQSQCYCKMNKVPCECDCKQCLNPIQY 667
KK ++ +YDW C V C C ++ L P+ Y
Sbjct: 391 KKRMEKSYQKVYDWQYIFCLELWTSVVCGCSSEEDLRPLAY 431
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 170 NNVNVPADVSRDNESEGDDNIEN---LLSEYYKYLERAHKQQRAYENYKSK-NEIAFVPQ 337
+N A+ S +E +GDD+ EN LL + K LE A +E + +E A +
Sbjct: 1423 DNTEDEANSSGLDEEKGDDDAENLRDLLQKARKELEVARLNSTMFEEKAQRISESAIALK 1482
Query: 338 QRQVKAKASVKS 373
R KA++ V S
Sbjct: 1483 DRADKAQSDVSS 1494
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 257 KY-LERAHKQQRAYENYKS--KNEIAFVPQQRQVKAKASVKSG 376
KY LE AHKQQR + Y S NE+ + Q ++ AS ++G
Sbjct: 137 KYELEMAHKQQRKIKGYGSCANNELEKLASQLTLETPASDQAG 179
>12_02_1245 -
27308143-27308787,27308923-27308983,27309064-27309440,
27309657-27310517
Length = 647
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +2
Query: 119 YDTIIFSDIADIMNELENNVNVPADVSRDN--ESEGDDNIENLLSEYYKYLERAHKQQRA 292
Y + I+ L++ +N +V R E E E L+ +Y+++ +QQRA
Sbjct: 318 YTAVALQTISRHFRCLKDAINDQINVIRKKLGEEENSSGKEGKLTRL-RYIDQQLRQQRA 376
Query: 293 YENYKSKNEIAFVPQQRQVKAKASVKSGAYSSNYDHP 403
++ Y + A+ PQ+ + ++ ++ HP
Sbjct: 377 FQQYGMIPQNAWRPQRGLPENSVTILRAWLFEHFLHP 413
>11_06_0690 + 26303733-26306540
Length = 935
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 569 KPIYDWIQSQCYCKMNKVPCECDCK 643
+PI W+Q +C+C + + DCK
Sbjct: 84 RPIPRWLQGRCFCCLGLGHLKADCK 108
>09_03_0141 + 12704611-12704987,12707391-12707760
Length = 248
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 605 CKMNKVPCECDCKQCLNPIQYV 670
C++ PC C+C C +P Y+
Sbjct: 153 CEVTADPCHCECIGCADPAAYL 174
>03_06_0707 -
35655084-35655215,35656088-35656229,35656358-35656485,
35656852-35656944,35657183-35657252,35657324-35657445,
35658143-35658265,35659453-35659710,35659995-35660074,
35660244-35660389,35660773-35660906,35661001-35661137,
35663013-35663135,35663521-35663590,35663925-35664050,
35664166-35664393
Length = 703
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +2
Query: 152 IMNELENNVNVPADVSRDNESEGDDNIENLLSEYYKYLERAHKQQRAYENYKSKNEIAFV 331
+ +L + + D+ ++N + DN+ L +Y +E H + +EN + K +
Sbjct: 187 LYRDLVSQGKLQHDIYQENVATQLDNLLRRLEQYEMEMEDYHARLSMWENTREKQRRRLL 246
Query: 332 PQQRQVKAKASV 367
Q+ + K + V
Sbjct: 247 VQEAEDKQRDGV 258
>02_02_0200 -
7718760-7718816,7718910-7719011,7719643-7719726,
7719821-7719916,7720016-7720066,7720162-7720302,
7720717-7720773,7720864-7720938,7721033-7721305,
7721382-7721441,7721531-7721620,7722519-7722638
Length = 401
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -1
Query: 329 QMLFHF*ICNFRMPFV-----VYELFLSICNIRRVSSQCYRLLHSHYLC*HPLVH 180
++L H+ N RMP + VY++F + I V C+R + L PL H
Sbjct: 158 RVLKHYSNMNQRMPLIYVKLYVYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTH 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,745
Number of Sequences: 37544
Number of extensions: 305291
Number of successful extensions: 876
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -