Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28n11
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu... 32 0.039
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 29 0.37
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 29 0.37
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 4.5
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 25 4.5
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 4.5
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 25 4.5
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 6.0
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 25 6.0
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 24 7.9
>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 92
Score = 31.9 bits (69), Expect = 0.039
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +3
Query: 120 RGIVYYKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAIIGTCIYKYVEEAHHASL 299
+GI+ Y +SP +Q+ AG N R++ Y P I IY + +E +
Sbjct: 23 KGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIYCWGKERNEFLN 82
Query: 300 RKDPRDFMDE 329
K R ++E
Sbjct: 83 SKHGRHLVEE 92
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 28.7 bits (61), Expect = 0.37
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Frame = +3
Query: 78 KFRMGKHFGELGFIRGIVY---YKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAI 248
++ + F E G IR Y YK+ GA+ KG+P+ + Y + +
Sbjct: 12 RYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSS 71
Query: 249 IGTCIYK-----YVEE-----AHHASLRKDPRDFMDEVDPN 341
+G IYK Y+E+ H K +DF+D V N
Sbjct: 72 VGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKAN 112
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 28.7 bits (61), Expect = 0.37
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Frame = +3
Query: 78 KFRMGKHFGELGFIRGIVY---YKMSPHEQKAYAGAITKGIPNFVTRMLATIAYWLPPAI 248
++ + F E G IR Y YK+ GA+ KG+P+ + Y + +
Sbjct: 12 RYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSS 71
Query: 249 IGTCIYK-----YVEE-----AHHASLRKDPRDFMDEVDPN 341
+G IYK Y+E+ H K +DF+D V N
Sbjct: 72 VGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKAN 112
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.1 bits (57), Expect = 1.1
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 7 SKSIQKKDRAKLIKEKVVLNLIKENSEWENISVNWVSLEELFIIKCLHMNKKPMLVQLQK 186
SKS Q D A + V L +EN EW++ +++ L + LH +K + +L+K
Sbjct: 434 SKSTQASDAATF---REVEQLYQENVEWDDAAIDRYYLLIHSTLPILHHSKARLKSELEK 490
Query: 187 ESPI 198
+PI
Sbjct: 491 -API 493
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 4.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +2
Query: 164 LCWCNYKRNPQFCDKNASNNC 226
LCWC + P+F ++C
Sbjct: 258 LCWCGKQEKPEFVKNLVPHSC 278
>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 176
Score = 25.0 bits (52), Expect = 4.5
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +1
Query: 367 YFDPIHWRKNQK 402
+FDPIHW++ +K
Sbjct: 146 FFDPIHWKRIKK 157
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 4.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 82 SEWENISVNWVSLEE 126
SEWE S+NW L++
Sbjct: 329 SEWEQHSLNWAKLDD 343
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 356 NKTLNVRINFIHKVPWVFSQR 294
N TL +HKVPW SQR
Sbjct: 6 NSTLARFGGLVHKVPWRLSQR 26
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.6 bits (51), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 350 TLNVRINFIHKVPWVFSQRCMMRFFDIFV 264
T RINF W+ R ++ FF +F+
Sbjct: 462 TTRERINFPELNEWITLHRFVISFFTVFI 490
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 24.6 bits (51), Expect = 6.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 197 FCDKNASNNCVLVTTCNNRNMYLQICRRSASCI 295
FC+ S +C L N++ +IC +S C+
Sbjct: 27 FCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCL 59
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +1
Query: 76 ENSEWENISVNWVSLE---ELFIIKCLHMNKKP 165
+N E + N S E E F+ +C HMN++P
Sbjct: 23 DNDHKEELINNQKSFESNVEAFMEQCAHMNRRP 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,199
Number of Sequences: 5004
Number of extensions: 31964
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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