Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n10
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   1.1  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    28   1.5  
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    27   2.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   8.0  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    25   8.0  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 496 WYSNSKNSEPTQRELHVFADASELAYACVAYWRLLYSDGSIELSLISS 639
           W   +KN+  +   L    DA  L       W+LLY+D S ++ L+SS
Sbjct: 497 WSEYTKNTGESSPVLVALVDA--LPRNASVEWQLLYNDSSCDVPLLSS 542


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 148 RATQPSLEINLGSCSANNIRALGVLWN--PITDNLGFRSGLGETFPNPLTKRKVLCHLMR 321
           +ATQ SLE  LG  + N +R    L N    T+     S L   F    TK+ VL  + +
Sbjct: 404 KATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNSSL-NNFSGFSTKKDVLHAIEK 462

Query: 322 VYDPL 336
           VYD L
Sbjct: 463 VYDLL 467


>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 263 KPERNPKLSVMGFHNTPNALI-LFAEQLPRLISNDG*VALRSAGINFSADGSLEIQPRI 90
           K  RNP+L +    N P AL+ L A  +PR +   G V L   G +  A+  L I  ++
Sbjct: 35  KFRRNPRLDIALVQNLPIALVFLPAADIPRFVGT-GRVHLGITGQDQIAEARLRIGDKL 92


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 308 QRTLRFVRGFGNVSPKPERNPKLSVMGFHNTPNALI--LFAEQLPRLISN 165
           +R    VRG  + +PKPE    +  +G  +    ++   FA  LP  I N
Sbjct: 160 ERNWETVRGINSRNPKPETTLTIPSLGLEDISMQVVPNAFASTLPLSILN 209


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 215 PNALILFAEQ--LPRLISNDG*VALRSAGINFSADGSLEI 102
           PNA + +  +  LPR I N G V         S DGS+E+
Sbjct: 3   PNARVSYGAEKYLPREIDNHGIVGNMHTSAMISLDGSVEM 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,984
Number of Sequences: 5004
Number of extensions: 66776
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)