Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n10
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1232 + 25429955-25430392,25430885-25431388,25432657-254328...    32   0.51 
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    28   8.4  

>08_02_1232 +
           25429955-25430392,25430885-25431388,25432657-25432803,
           25432999-25433106,25433242-25433331
          Length = 428

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 133 IPADLRATQPSLEINLGSCSANNIRALGVLWNP-ITDNLGFRSGL 264
           IP D+  + PSLE+ L   S+N  R +G+LW P IT    + + L
Sbjct: 272 IPGDVLWSDPSLEMGL---SSNKERGIGLLWGPDITQQFLYTNNL 313


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 406 WDTEFQPTEALRWSDWFQELSKVTSL 483
           W+ E  P +  RW +W+ + S++  L
Sbjct: 656 WELEEGPWQLKRWHEWYMKASRIKGL 681


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,968,941
Number of Sequences: 37544
Number of extensions: 433290
Number of successful extensions: 1032
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)