Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n10
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.7  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 266 PKPERNPKLSVMGFH 222
           P  E+NPKL ++G H
Sbjct: 85  PFCEKNPKLGILGTH 99


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 266 PKPERNPKLSVMGFH 222
           P  E+NPKL ++G H
Sbjct: 86  PFCEKNPKLGILGTH 100


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 304 LCHLMRVYDPLGLLAPI 354
           +CH +RVY   GL  PI
Sbjct: 143 ICHPLRVYTISGLKRPI 159


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 142 DLRATQPSLEINLGSCSANNIR 207
           DL+ + P + +  G+ S NNI+
Sbjct: 725 DLKLSNPDISVEDGTLSINNIQ 746



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +1

Query: 187 CSANNIRALGVLWNPITDNLGFRSGLGETFPNPLTKRKVLCHL 315
           C A   + +G+LWN     L  +S    T    +    VL  L
Sbjct: 798 CEAQGEKPIGILWNMNNKRLDPKSDSRYTIREEILANGVLSDL 840


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 63  NNICRQLCCLLNVIERVNIIV 1
           NN  +QLC  +N IE++ + V
Sbjct: 96  NNNYKQLCYNINYIEQIPVPV 116


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 63  NNICRQLCCLLNVIERVNIIV 1
           NN  +QLC  +N IE++ + V
Sbjct: 96  NNNYKQLCYNINYIEQIPVPV 116


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 63  NNICRQLCCLLNVIERVNIIV 1
           NN  +QLC  +N IE++ + V
Sbjct: 96  NNNYKQLCYNINYIEQIPVPV 116


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 63  NNICRQLCCLLNVIERVNIIV 1
           NN  +QLC  +N IE++ + V
Sbjct: 96  NNNYKQLCYNINYIEQIPVPV 116


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 63  NNICRQLCCLLNVIERVNIIV 1
           NN  +QLC  +N IE++ + V
Sbjct: 96  NNNYKQLCYNINYIEQIPVPV 116


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 625 SLISSKARVTPLKPISIP 678
           +L +S  R+T L P+S+P
Sbjct: 599 TLDASHNRITELSPLSVP 616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,989
Number of Sequences: 438
Number of extensions: 4958
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)