Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n08
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0671 + 26099292-26099491,26099589-26099622,26104787-261048...    28   6.5  
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558...    27   8.7  

>11_06_0671 +
           26099292-26099491,26099589-26099622,26104787-26104813,
           26105557-26105642,26105735-26105783,26105969-26106018,
           26106692-26107185,26107379-26107539,26107808-26108017,
           26108100-26108292,26108367-26108444,26108555-26108649,
           26109158-26109280
          Length = 599

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 237 WLKFNKQIQNKAYLMSNNNKKRVLKTNCKCKNSKLKSYKYFI*HSRR--LHGLFI*KNNY 410
           WLK N     +  L + N  ++ ++T C       K +K  + H+R+  L G      N 
Sbjct: 342 WLKHNGINTVEDMLKALNKNEKKIRTECFKLEKNSKDWKETVKHARKCDLEG----NCNL 397

Query: 411 KSFKVNVDLIVVIFS 455
           KS++V    +V+ F+
Sbjct: 398 KSYRVEEKHVVLFFN 412


>09_04_0151 -
           15154063-15154296,15155616-15155660,15155749-15155820,
           15155932-15156024,15156282-15156351,15156716-15156912,
           15156946-15157215,15158620-15158757,15158841-15158930,
           15159041-15159247,15159987-15160154,15160300-15160503,
           15160584-15160670,15160748-15160861,15161689-15161835,
           15161914-15162063,15162211-15162276,15162376-15162480,
           15162625-15162798,15162930-15163154,15163534-15163590,
           15163858-15164019,15164234-15164302,15164391-15164471,
           15164823-15164925,15165011-15165156,15165285-15165359,
           15165441-15165508,15165586-15165667,15165745-15165858,
           15166358-15166476,15166692-15166781,15166862-15166988
          Length = 1382

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 126 EAVLQIKKIEDSIRLCPIRSQQYWRNL 206
           EA+L IK++ED I+L  +    +  NL
Sbjct: 553 EAILVIKQLEDQIKLLELEKSSFQNNL 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,766,960
Number of Sequences: 37544
Number of extensions: 230262
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)