Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n08
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite indu...    30   1.1  
Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z81464-3|CAB03858.1|  151|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF099914-8|AAC68763.3|  127|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z81555-4|CAB04515.1|  202|Caenorhabditis elegans Hypothetical
           protein F58E10.4 protein.
          Length = 202

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +3

Query: 147 KIEDSIRLCPIRSQQYWRNLKANIDKDATMWLKFNKQIQNKAYLMSNN------NKKRVL 308
           +I   + +CPI  +        N+D+     ++ N Q   +A + SN        KK ++
Sbjct: 50  RISVQVPICPICEKPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYSNACTVPKCKKKELV 109

Query: 309 KTNC-KCKNSKLKSYKYFI*HS 371
             NC KC+N+   S+++   HS
Sbjct: 110 AMNCSKCRNNYCLSHRHERDHS 131


>AY519854-1|AAR89635.1|  229|Caenorhabditis elegans arsenite
           inducible RNA associatedprotein (aip-1) protein.
          Length = 229

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +3

Query: 147 KIEDSIRLCPIRSQQYWRNLKANIDKDATMWLKFNKQIQNKAYLMSNN------NKKRVL 308
           +I   + +CPI  +        N+D+     ++ N Q   +A + SN        KK ++
Sbjct: 77  RISVQVPICPICEKPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYSNACTVPKCKKKELV 136

Query: 309 KTNC-KCKNSKLKSYKYFI*HS 371
             NC KC+N+   S+++   HS
Sbjct: 137 AMNCSKCRNNYCLSHRHERDHS 158


>Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical
           protein H36L18.1 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 160 ESSIFLICRTASHAFEIHKFHNSKFLYPCSNSVHHVLISNSLFIFVRSPWW 8
           E +IF I +  ++ F +HK + S    P        L + S F+F ++ +W
Sbjct: 371 EKNIFFISQVKNYKFSVHKIYISFQNSPPEIDAAFQLNNTSSFLFHQNKYW 421


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +3

Query: 138 QIKKIEDSIRLCPIRSQQYWRNLKANIDKDATMWLKFNKQIQNKAYLMSN---NNKKRVL 308
           ++KK E  + LC  RS     NL+++ +K+  + L+F ++ +N+  L +       KR L
Sbjct: 214 KMKKNERRVELCGSRSYCSGNNLRSSSNKE-NLILEFKRKWRNQRNLRNRKVLRRSKRSL 272

Query: 309 KTNCKCKNSKLKSYKYFI*HSRRLHGL 389
                   SK  S+ +F+ +  R+  L
Sbjct: 273 TRLVVDSVSKSDSHGFFVKNMDRMPSL 299


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 12  HGERTNIKREFDIKTWCTELE-QGYKNLELWNLWISNACEAVLQIKKIEDSIRLCPIRSQ 188
           H   +N+ +   +KT  +E+  +G KN    +   S         + +ED+I   PI  Q
Sbjct: 653 HSSSSNLMKAMKLKTPKSEVRGRGKKNFSGSDDEESARINIQQHQRSMEDAIMQLPIEEQ 712

Query: 189 QYWRNLKANID 221
           + WR  K+  D
Sbjct: 713 KMWRLFKSMKD 723


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 12  HGERTNIKREFDIKTWCTELE-QGYKNLELWNLWISNACEAVLQIKKIEDSIRLCPIRSQ 188
           H   +N+ +   +KT  +E+  +G KN    +   S         + +ED+I   PI  Q
Sbjct: 653 HSSSSNLMKAMKLKTPKSEVRGRGKKNFSGSDDEESARINIQQHQRSMEDAIMQLPIEEQ 712

Query: 189 QYWRNLKANID 221
           + WR  K+  D
Sbjct: 713 KMWRLFKSMKD 723


>Z81464-3|CAB03858.1|  151|Caenorhabditis elegans Hypothetical
           protein C08E8.4 protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/42 (21%), Positives = 26/42 (61%)
 Frame = +3

Query: 228 ATMWLKFNKQIQNKAYLMSNNNKKRVLKTNCKCKNSKLKSYK 353
           A  WLKF+++ + + +  + N + ++LK + +  ++++ + K
Sbjct: 16  AVFWLKFHEKSEKEEFDFAKNYRDQILKNHFRVMHTRILNAK 57


>AF099914-8|AAC68763.3|  127|Caenorhabditis elegans Hypothetical
           protein C40A11.8 protein.
          Length = 127

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 37  ENLILKRGARNWSRDIRIWNY 99
           +N++L+RG  +W R  R W Y
Sbjct: 100 DNMVLRRGVCSWERKSRRWIY 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,893
Number of Sequences: 27780
Number of extensions: 249786
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)