Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n08
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 239 PHSCIFVNICFEISPILLTSYRAESYRIFYFFNL 138
           P  C+F N  F I   L + Y      +F ++N+
Sbjct: 333 PDQCLFYNTDFIIYSSLSSFYIPCIIMVFLYYNI 366


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 330 NSKLKSYKYFI*HSRRLHGLFI*KNNYKSFKVNVDLIVVIFSDYC 464
           N K  +Y  +  ++   +  +  K  YK++ +N++ I V    YC
Sbjct: 321 NYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYC 365


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 76  CSNSVHHVLISNSLFIFVRS 17
           CSN +  +     L++FVRS
Sbjct: 935 CSNYLREISDGEPLYVFVRS 954


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -1

Query: 565 WWLWKSTS 542
           WW W +TS
Sbjct: 29  WWFWTATS 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,224
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)