Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28n07
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0408 + 17352110-17352619,17352709-17352834,17353036-173532... 150 7e-37
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 136 9e-33
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 122 2e-28
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968 73 1e-13
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 42 3e-04
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 39 0.003
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 34 0.071
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 34 0.071
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 30 1.2
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 29 2.7
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 29 3.5
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983... 28 6.2
02_04_0256 + 21331396-21332268 28 6.2
04_02_0011 - 8513471-8513673,8513815-8513869 27 8.2
>09_04_0408 +
17352110-17352619,17352709-17352834,17353036-17353209,
17353669-17353830,17353998-17354140,17354835-17354910,
17355445-17355589,17355847-17355896,17356001-17356078,
17357153-17357314,17357406-17357669,17357929-17358033,
17358158-17358247,17358344-17358346
Length = 695
Score = 150 bits (364), Expect = 7e-37
Identities = 66/130 (50%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Frame = +2
Query: 194 EDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILN 373
E +DGIR WNV P +R +A VVP++ +Y PLK+ PD+P + Y P+ C CR+ILN
Sbjct: 8 EAQDGIRMPWNVIPGTREDALSCVVPISAIYTPLKQVPDIPVLPYSPLRC--RMCRSILN 65
Query: 374 PMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEY--TITRAQAMPP 547
P VDY AK+WVC FCFQRN FP Y++ISE + PAEL P ++T+EY T +PP
Sbjct: 66 PFSIVDYVAKIWVCPFCFQRNHFPQHYSSISESNLPAELFPQYTTVEYISTAETGPVVPP 125
Query: 548 IYLLVVDTCL 577
+++ VVDTC+
Sbjct: 126 VFMFVVDTCM 135
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 136 bits (330), Expect = 9e-33
Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 16/141 (11%)
Frame = +2
Query: 203 DGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDL--PPIQYEPVLCTRNTCRAILNP 376
D +R TWN WP S++EA+R VVPLA P++ L PP+ Y P+ C + C A+LNP
Sbjct: 19 DAVRLTWNAWPRSKVEASRCVVPLAAAISPVRSPESLASPPLPYPPLRC-KPPCSALLNP 77
Query: 377 MCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYTITRAQAM----- 541
+VD+ AK+W+C CF RN FPP YAAISE + PAEL P ST+EY + A
Sbjct: 78 FARVDFAAKIWICPLCFSRNHFPPHYAAISESNVPAELFPQCSTVEYLLAGAAPAAGVPL 137
Query: 542 ---------PPIYLLVVDTCL 577
PP++L V+DTC+
Sbjct: 138 HQGGPPAPPPPVFLFVIDTCV 158
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 122 bits (294), Expect = 2e-28
Identities = 57/127 (44%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Frame = +2
Query: 203 DGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILNPMC 382
DGIR WNV P ++ +A VVP++ +Y PL+ P +P + Y P+ C CR+ILNP C
Sbjct: 151 DGIRMPWNVIPGTKQDAANCVVPVSAIYTPLRPNPAIPVLPYGPLRC--RMCRSILNPFC 208
Query: 383 QVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEY--TITRAQAMPPIYL 556
VDY AK+W RN FP Y++ISE + PAEL P ++T+E+ T +PP++L
Sbjct: 209 VVDYVAKIW-------RNHFPQHYSSISESNLPAELFPQYTTVEFMSTAETGPVVPPVFL 261
Query: 557 LVVDTCL 577
VVDTC+
Sbjct: 262 FVVDTCM 268
>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
Length = 800
Score = 73.3 bits (172), Expect = 1e-13
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Frame = +2
Query: 203 DGIRFTWNVWPSSRIEATRLVVPLACLYQPL-KERPD-LPPIQYEPVLC----TRNTCRA 364
+G+R+ W+ WP + A LVVP + L PL PD LP + Y P+ C C A
Sbjct: 10 EGLRWPWHAWPPTASAAASLVVPTSVLCTPLHPAAPDLLPLLPYAPLRCGGGGGGGGCGA 69
Query: 365 ILNPMCQVDYRAKLWVCNFC-FQRNPFPPQYAAISEQHQPAELIPNFSTIEYTI--TRAQ 535
LNP +V + W C FC NPFP ++ PAEL P S++EY + A+
Sbjct: 70 ALNPFSRVHHATARWACPFCGASANPFP---RLLAPDALPAELFPTHSSVEYALPPDAAE 126
Query: 536 A----MPPIYLLVVD 568
A PP + VVD
Sbjct: 127 AGGGPGPPSVVFVVD 141
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 42.3 bits (95), Expect = 3e-04
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Frame = +2
Query: 209 IRFTWNVWPSSRIEATRLVVPLACLYQPLK-ERPDLPPIQYE------PVLCTRNTCRAI 367
+R T N P + T +PLA + QP P PIQ P+ C+R C+A
Sbjct: 379 MRCTLNQIPCTGDILTTSAMPLALMVQPFALPHPSEEPIQLVDFGGMGPIRCSR--CKAY 436
Query: 368 LNPMCQVDYRAKLWVCNFCFQRNPFPPQY---AAISEQHQPAELIPNF--STIEYTITR- 529
+NP + + K +VCN C N P +Y + + A+ P T+E+ ++
Sbjct: 437 INPFMRFIDQGKHFVCNLCGFSNDTPREYLCNLGPDGRRRDADDRPELCRGTVEFIASKE 496
Query: 530 ---AQAMPPIYLLVVDTCL 577
MP +Y ++D +
Sbjct: 497 FLVRDPMPAVYFFLIDVSM 515
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 39.1 bits (87), Expect = 0.003
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Frame = +2
Query: 209 IRFTWNVWPSSRIEATRLVVPLACLYQPLK-ERPDLPPIQYE------PVLCTRNTCRAI 367
+R T N P + T +PL+ + QP P PIQ P+ C+R C+A
Sbjct: 97 MRCTVNQIPCTGDLLTTSGMPLSLMVQPFSLPHPSEEPIQLVDFGDMGPIRCSR--CKAY 154
Query: 368 LNPMCQVDYRAKLWVCNFCFQRNPFPPQY---AAISEQHQPAELIPNF--STIEYTITR- 529
+NP + + + ++CN C N P +Y + + A+ P T+E+ ++
Sbjct: 155 INPFMRFVDQGRRFICNLCGFSNDTPREYICNLGPDGRRRDADDRPELCRGTVEFVASKE 214
Query: 530 ---AQAMPPIYLLVVDTCL 577
MP +Y ++D +
Sbjct: 215 FLVRDPMPAVYFFLIDVSM 233
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 34.3 bits (75), Expect = 0.071
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 9/128 (7%)
Frame = +2
Query: 212 RFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVD 391
R T + P+S+ +R +PL + P+ I+ C R CR +NP
Sbjct: 318 RLTTHAIPASQSLVSRWHLPLGAVEVPVINFGSAGVIR-----CRR--CRTYINPYATFA 370
Query: 392 YRAKLWVCNFCFQRNPFPPQY-AAI--SEQHQPAELIPNFS--TIEYTITR----AQAMP 544
+ W CN C N P +Y I S + A+ P S T+E+ MP
Sbjct: 371 DAGRKWRCNLCTLLNDVPGEYFCGIDGSGRRYDADQRPELSKGTVEFVAPTEYMVRPPMP 430
Query: 545 PIYLLVVD 568
P Y ++D
Sbjct: 431 PSYFFLID 438
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 34.3 bits (75), Expect = 0.071
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 341 CTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYT 520
CT N+ A P +D K+ VCNFCF++ + + AA ++Q P L P+ S
Sbjct: 69 CTTNSIPASSGPDRNIDEGDKIRVCNFCFKQ--WEQERAAANKQMMPL-LSPSLSEASLF 125
Query: 521 ITRA 532
T++
Sbjct: 126 STKS 129
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 169 CGHIADQKVMRRTSYKHMSKFLKSQYVFIQKSHKFL 62
C H+ D ++ TS KH L +++ ++ KFL
Sbjct: 653 CSHLDDGRISSMTSVKHEISLLNTRFTALETDQKFL 688
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 29.1 bits (62), Expect = 2.7
Identities = 27/110 (24%), Positives = 50/110 (45%)
Frame = -3
Query: 448 RWKWVSLEAKVADP*FSSVIHLAHWVQYSSACISCTEYRLVLYRW*VGALLKRLVQASQR 269
R K V L K A F SV ++ + VQ + +S ++ +G+L L+ S
Sbjct: 513 RDKRVQLLQKYAHTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLSGSGM 572
Query: 268 HNKPRSLNST*WPYVPSEPYAIAVFILLDELLVCGHIADQKVMRRTSYKH 119
+K + ++ + Y +F+L + + GH DQK +++ Y+H
Sbjct: 573 FSK-QEIDE-----IVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 616
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 101 FKKFAHVFITGSPHDFLIGDM----ATYEEFIQQNEDRD 205
FK A+VF+ G P+D GD+ A Y E + N RD
Sbjct: 32 FKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRD 70
>06_03_0956 +
26296744-26297382,26297595-26297669,26298147-26298341,
26298426-26298559,26298713-26298779,26298985-26299043,
26299204-26299321,26299613-26299726,26299855-26299986,
26300076-26300492,26300904-26300954,26301303-26301373,
26302067-26302151,26302258-26302410,26302522-26302596,
26302755-26302844,26303953-26304000,26304081-26304195,
26305356-26305459,26305582-26305692
Length = 950
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -3
Query: 223 PSEPYAIAVFILLDELLVCGHIADQKVMRRTSYKHM-SKF---LKSQYVFIQKSHKFLNF 56
P+ PY ++F+ E L DQ+V RR KH+ +K+ L + V + HK +
Sbjct: 127 PALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGL 186
Query: 55 LETKQTGEA 29
L + + G A
Sbjct: 187 LMSSKDGVA 195
>02_04_0256 + 21331396-21332268
Length = 290
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 452 YAAISEQHQPAELIPNFSTIEYTITRAQAMPPIYLLVVDT 571
+ ++ H P++LI S + + +PP+ L++VD+
Sbjct: 122 HVLVAAAHSPSDLISLLSRAQRLLAHPGRLPPVRLILVDS 161
>04_02_0011 - 8513471-8513673,8513815-8513869
Length = 85
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Frame = +2
Query: 317 PIQYEPVLCTRNTCRAILNPMCQVDYRAK--------LWVCNFCFQRNPFP 445
PI P C TC+AI C Y++K L+ CNFC P P
Sbjct: 34 PITEVPKPCVDATCKAI----CSDKYQSKGECFSTDGLYYCNFCANSPPLP 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,434,788
Number of Sequences: 37544
Number of extensions: 384660
Number of successful extensions: 883
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -