Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28n07
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 201 3e-52
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 31 0.45
AL034393-17|CAA22315.1| 503|Caenorhabditis elegans Hypothetical... 31 0.78
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z77666-4|CAB01227.1| 139|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 27 9.6
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 27 9.6
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 201 bits (490), Expect = 3e-52
Identities = 81/143 (56%), Positives = 111/143 (77%), Gaps = 4/143 (2%)
Frame = +2
Query: 161 MATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDL----PPIQY 328
MAT+EE++ + DG++FTWN+WP SR+++ +LVVPL C + PLKERP PP++Y
Sbjct: 1 MATWEEYLGAQQANDGVQFTWNMWPHSRVDSQKLVVPLTCFFTPLKERPSTEVAQPPLEY 60
Query: 329 EPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFST 508
+PVLC + +C+AILNP+C VDYRAK+W+C FC RNPFP YAAI+E ++P EL P F+T
Sbjct: 61 DPVLCQKASCKAILNPLCAVDYRAKIWMCPFCNNRNPFPAHYAAIAEDNRPPELYPQFTT 120
Query: 509 IEYTITRAQAMPPIYLLVVDTCL 577
IEYT+ +A MPPI++ VVDTC+
Sbjct: 121 IEYTLRKATTMPPIFVFVVDTCM 143
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical
protein ZC518.2 protein.
Length = 984
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 266 VPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQV-DYRAKLWVCNFCFQRNPF 442
+P A P ++ +L IQ ++ R CR +NP + D+R W CN C + N
Sbjct: 307 LPFAITLHPFRDVKNLNIIQTSNIVRCRY-CRTYINPYVYLPDHRH--WKCNLCNRNNDL 363
Query: 443 PPQY 454
P +
Sbjct: 364 PDDF 367
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 31.5 bits (68), Expect = 0.45
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +2
Query: 218 TWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDYR 397
T ++ +S+I ++ P A L + KE P + P+ C R C+A + P +
Sbjct: 416 TNDILKASQIPLAVVISPFASLTEYEKEPPVVDLGPQGPIRCQR--CKAYICPFMEFQDG 473
Query: 398 AKLWVCNFCFQRNPFPPQYAA 460
+ + C FC R Y A
Sbjct: 474 GRSFRCPFCHARTSVEDAYFA 494
>AL034393-17|CAA22315.1| 503|Caenorhabditis elegans Hypothetical
protein Y18D10A.23 protein.
Length = 503
Score = 30.7 bits (66), Expect = 0.78
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +3
Query: 162 WPHTRSSSSRMKTAMAYGSLGTYGHQVEXXXXXXXXXXXACTNRLRSAPTYHRYSTSLYS 341
WP R+ R MAY +LG + QV AC L SA + + +
Sbjct: 101 WPKYRTHCRRPYPEMAYRALGNWARQVVAVCLVVSQFLIACVLLLISAENFTNLLNTFFH 160
Query: 342 VH 347
+H
Sbjct: 161 LH 162
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 369 NIALHVFRVQSTGSYCIGGRSGRSLSGWYKQAKGTTSLVASILLD 235
N+ V GS+ + +SG +GW K +G T +++ +D
Sbjct: 458 NVLYKTIDVIPAGSFIVDPKSGVVRTGWSKYERGDTYRISAQAMD 502
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 369 NIALHVFRVQSTGSYCIGGRSGRSLSGWYKQAKGTTSLVASILLD 235
N+ V GS+ + +SG +GW K +G T +++ +D
Sbjct: 458 NVLYKTIDVIPAGSFIVDPKSGVVRTGWSKYERGDTYRISAQAMD 502
>Z77666-4|CAB01227.1| 139|Caenorhabditis elegans Hypothetical
protein K08E7.4 protein.
Length = 139
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 402 NYGSATFASNETHFHLNMLLYQNSINLQN-*FLTFPP*STQ*REHRLCPQSTCLLLIL 572
N+ T E F L L+Y+ S NLQN FLT E R+ LLL L
Sbjct: 10 NFNLRTLNFREHFFPLQFLIYKASENLQNSYFLTLQDSKPLGSEKRIMISQIILLLTL 67
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 369 NIALHVFRVQSTGSYCIGGRSGRSLSGWYKQAKGTTSLVASILLD 235
N+ V GS+ + +SG +GW K +G T +++ +D
Sbjct: 458 NVLYKTIDVIPAGSFIVDPKSGVVRTGWSKYERGDTYRISAQAMD 502
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 369 NIALHVFRVQSTGSYCIGGRSGRSLSGWYKQAKGTTSLVASILLD 235
N+ V GS+ + +SG +GW K +G T +++ +D
Sbjct: 458 NVLYKTIDVIPAGSFIVDPKSGVVRTGWSKYERGDTYRISAQAMD 502
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,831,793
Number of Sequences: 27780
Number of extensions: 332386
Number of successful extensions: 785
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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