Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28n06
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom... 30 0.37
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 29 0.64
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 27 2.0
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 4.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.0
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 6.0
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 7.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 7.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 22 8.3
>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 177
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 231 NVDPKTLSWLPWLTHYANTSGTKVLNAIDYTGESLANFFG--ITTPKYQLEIDEYERLKE 404
N +P+ S PWL + + + +A+ Y G N FG ++T + + + E
Sbjct: 11 NNNPELKSNFPWLADRIHEGRSSIFHALGYVGLKTENAFGWFLSTERKTISTAKNEVFSS 70
Query: 405 EKKKM 419
+++K+
Sbjct: 71 DERKL 75
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 562 RKPHLKLSQVNQMFNYKHCMYKQFLIVSSTSHAPCTKHNTVIFNIRI 702
+K L N++F++ H + K+FL +S +++ K IFN++I
Sbjct: 425 KKLFTDLPSNNELFSFIHNIPKEFLHLSDSTYLDLEKQVLRIFNVQI 471
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Frame = -2
Query: 647 DDTIRNCLYIQCL*LNIWFTWLNFRCGFLNILH*NH---AAYFSFISGFLSC---YIFSW 486
+ TI C + L ++ W N+ FL ++H A Y S+ F SC +
Sbjct: 365 EPTIGACCAMSFLFYITFYCWDNYYYSFLQVVHYTSITAAGYISYTYSFTSCATGFFLGI 424
Query: 485 LI*H*RNITTRILWY 441
LI +T R WY
Sbjct: 425 LI----RLTKRYKWY 435
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 366 YQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLV 476
Y + E ER +EK K+ED SA + + G P+V
Sbjct: 158 YLQSVFEEERDTKEKAKIEDLSADVIMSDLGPPFPMV 194
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 553 SILRKPHLKLSQVNQMFNY 609
+IL +PHL++S +Q++NY
Sbjct: 619 AILYRPHLRMSICSQLWNY 637
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 381 DEYERLKEEKKKMEDESAGWVPK 449
D+YE++KEE K++ E ++ K
Sbjct: 192 DDYEKIKEENKRLYKERKSFLSK 214
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +3
Query: 267 LTHYANTSGTKVLNAIDYTGESLANFFGITTPKYQLEIDEYERLKEEKKKMEDE 428
+T + +G ++A+D +G+ I K +L ++ ER+ +E ++ +E
Sbjct: 503 VTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEE 556
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 519 YEAEVCCMVLMKYIKKTTSKIKPSEPNV 602
+ E C +I+K S++ PS+PNV
Sbjct: 284 FALESLCFSPAPFIQKVLSRLLPSDPNV 311
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 381 DEYERLKEEKKKMEDESAGWVPKNSGGDI 467
D R K KM D+S VP+N G D+
Sbjct: 2633 DSVPRSKRNTGKMFDDSLELVPENLGNDL 2661
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 21.8 bits (44), Expect(2) = 8.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 527 SFISGFLSCYI 495
SF+ GFL+C+I
Sbjct: 728 SFLCGFLNCFI 738
Score = 21.4 bits (43), Expect(2) = 8.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 593 FTWLNFRCGFLN 558
F+ ++F CGFLN
Sbjct: 724 FSQISFLCGFLN 735
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,217
Number of Sequences: 5004
Number of extensions: 46455
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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