Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n06
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.9  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.6  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 345 FGITTPKYQLEIDEYERLKEEKKKMEDE 428
           F   TPK+   IDEY     + KK  ++
Sbjct: 360 FSNVTPKFPRNIDEYNNNDLDTKKWNNK 387


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 363 KYQLEIDEYERLKEEKKKMEDE 428
           +Y+ +   YE+L  EKKK+ +E
Sbjct: 244 EYKKKDRRYEKLHNEKKKLLEE 265


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/42 (19%), Positives = 19/42 (45%)
 Frame = +3

Query: 327 ESLANFFGITTPKYQLEIDEYERLKEEKKKMEDESAGWVPKN 452
           E+  N F ++   +   +D+Y  ++   + +  E    + KN
Sbjct: 538 ETYCNLFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKN 579


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/42 (19%), Positives = 19/42 (45%)
 Frame = +3

Query: 327 ESLANFFGITTPKYQLEIDEYERLKEEKKKMEDESAGWVPKN 452
           E+  N F ++   +   +D+Y  ++   + +  E    + KN
Sbjct: 506 ETYCNLFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKN 547


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 408 SLLLIFHTRLFQADILVLLCQR 343
           SLL + +  L  AD + +LC +
Sbjct: 7   SLLCVIYCALVHADTVAILCSQ 28


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 408 SLLLIFHTRLFQADILVLLCQR 343
           SLL + +  L  AD + +LC +
Sbjct: 7   SLLCVIYCALVHADTVAILCSQ 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,252
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)