Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28n05
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    31   0.20 
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    27   3.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   5.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   7.5  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.5  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   9.9  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   9.9  

>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +3

Query: 270 INRLTEMKRKRLKVITVRPEDGQELDVNDLIERHHTSHKTLELGVVLAKQVIKNEKVREL 449
           +++L+++ R    +I+V P+D     + D ++       TLE+ V     V K+ ++++L
Sbjct: 118 LDKLSDILRSDEYMISVLPDDSVLFSLGDELDSDFEDDNTLEIEVENPADVSKDAEIKKL 177

Query: 450 LQDNQ 464
              NQ
Sbjct: 178 KLQNQ 182


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 661 P*GGKAASEDSRSVLYTGLVCSSISCDVIQEASHAVYQIR 542
           P   K   +DS  VLYT +V    +   I +A  A Y IR
Sbjct: 215 PRSAKKLDQDSEFVLYTVVVFKKTADSFITKAREAKYTIR 254


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 204 FCSALAIPPALYFPSISTQHRKITQYR 124
           FC +LA+PP L   + S QH   TQ++
Sbjct: 537 FCPSLAVPPILTILA-SLQHTSPTQHK 562


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/87 (18%), Positives = 39/87 (44%)
 Frame = +3

Query: 225  SIVKTLLDAGHEVTYINRLTEMKRKRLKVITVRPEDGQELDVNDLIERHHTSHKTLELGV 404
            +++   +  G  V +++R  E  +  L     RP    +  ++D+ +R H  ++      
Sbjct: 953  NLLSNFVKEGGIVLHVHRNLEHIKSYLSEDQTRPTYKDQESIDDVYKRRHVWYRECRSHY 1012

Query: 405  VLAKQVIKNEKVRELLQDNQETFDTVI 485
             ++  V+ N+ + E +Q +   F  V+
Sbjct: 1013 FIS-PVLSNQVIDEKIQYSMSRFLDVV 1038


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 624 QCCTLDWSAPALAVTSSRRHRMR 556
           QC  L W  PAL++  SR   +R
Sbjct: 305 QCSCLQWVCPALSILQSRVDAVR 327


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 570 SWMTSQLMLEQTSPVYSTDLLSSEAALPPY 659
           S ++++L +  T+P+ +T+ +   AALP Y
Sbjct: 51  STLSNKLPVPSTNPILTTEPIVGPAALPVY 80


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 263 DIHKPTYGDEEETTKGHHCPS 325
           D  KP Y D+E   KG  CP+
Sbjct: 297 DGKKPGYLDDETVPKGSRCPT 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,221
Number of Sequences: 5004
Number of extensions: 50957
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)