Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28m24
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0272 + 2105579-2105671,2105779-2105882,2106006-2107014,210... 34 0.12
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 32 0.48
06_01_0397 + 2855273-2855347,2855515-2855606,2856317-2856347,285... 30 1.5
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693... 29 3.4
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241... 29 4.5
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005... 28 5.9
12_02_0720 - 22510996-22512949,22513752-22514533 28 7.8
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 7.8
>03_01_0272 +
2105579-2105671,2105779-2105882,2106006-2107014,
2107130-2107153
Length = 409
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +1
Query: 424 PLIGALSVEDLKQSNKNSETAKS-SPSP 504
P++GAL+VED+K S+ NS +S SPSP
Sbjct: 336 PILGALTVEDIKISSANSSPRRSRSPSP 363
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1
Query: 424 PLIGALSVEDLKQSNKNSETAKSSPSPERQ 513
P++GAL+V+DLKQS+ S + + SPS R+
Sbjct: 383 PVLGALTVDDLKQSSATS-SPRRSPSHNRE 411
>06_01_0397 +
2855273-2855347,2855515-2855606,2856317-2856347,
2856687-2856830,2856935-2857162,2857374-2857487,
2857749-2858249
Length = 394
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +1
Query: 376 QKSKGEKQDGTTNKMT-PLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQKPVQ 552
+K + +K++ +TN L G++S+ + +++ + KSSPSP Q S +
Sbjct: 275 KKGQAKKENASTNPSALKLQGSISLSN-NINDRKAPKKKSSPSPPDQKKPVAASPPDQKK 333
Query: 553 PVLKKSPLDMKLMEAMSLDEFAITEKVDKNLLGTSPK 663
PV P K + D+ +V K PK
Sbjct: 334 PVALSPPDHKKTVTPSPPDQKKPVARVQKAKAAGPPK 370
>09_02_0288 +
6936867-6936879,6936965-6937038,6937445-6937588,
6937754-6937958,6938552-6938852,6938952-6939150,
6939393-6939477,6939554-6939595,6939676-6939724,
6939872-6939941,6940296-6940301
Length = 395
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +1
Query: 373 KQKSKGEKQ----DGT-TNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISK 537
K K KG KQ DG +NK+ L L VEDL N ++E A + ++ T +
Sbjct: 265 KSKKKGGKQLEVGDGKHSNKIRTLEDGLIVEDLSTGNLDAEMASNGSKVSIKYVGT-LQD 323
Query: 538 QKPVQPVLKKSPLDMKL 588
K V+ + + P KL
Sbjct: 324 GKIVESNVGEKPYKFKL 340
>04_04_1488 -
33922253-33922361,33922459-33922649,33922752-33924130,
33924205-33924340,33924427-33924502,33924806-33924925,
33925005-33925082,33925605-33925695,33925805-33925889,
33925977-33926132,33926317-33926373,33926454-33926552,
33926702-33926814,33926924-33927014
Length = 926
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +1
Query: 361 LEFHKQKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSS-PSPERQHGDTKISK 537
L FH+ Q+ N + PL + S KQ + S+ A+ Q+GD + S+
Sbjct: 420 LSFHQSSYSSIIQNVKQNYIPPLTVSTSACLTKQESLPSDDAQHQFHMANMQNGDLEGSE 479
Query: 538 QKPVQPVLKKSPLDMKLMEAMSLDEFAITEKVDKNLLG 651
+PV + +S L+ + + D + ++N G
Sbjct: 480 VQPVIDSISESKLNATSRDPRNTDSYTSRSTSEQNSKG 517
>04_04_1363 -
32898345-32898371,32898986-32899837,32900234-32900500,
32900723-32901025,32902329-32902433,32903361-32903548,
32903628-32903721
Length = 611
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 376 QKSKGEKQDGTTNKMTPLIGALSVEDLKQSNKNSETAKSSPSPERQHGDTKISKQKPVQP 555
Q+ E DG ++ + + + NS+ + S S HGD ++ QP
Sbjct: 423 QEQGNENPDGCSSYCDIKAPSDGSPSMSDATLNSKVSDWSSSSFHDHGDNQVDAGPDQQP 482
Query: 556 VLKKSPLDMK-LMEAMSLDEFAITEKVDK 639
S +D++ +++A+ L ++++K+ K
Sbjct: 483 T---SNMDIESVLQALQLARISLSQKLSK 508
>12_02_0720 - 22510996-22512949,22513752-22514533
Length = 911
Score = 27.9 bits (59), Expect = 7.8
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Frame = +1
Query: 190 VVKLKPLSNEVKRKL--KRLFDITVRADDNL---PKAICHDC----LQQVSTLHLYAVKV 342
V ++KPLSN+ R+L KR+FD +L + I C L ++T L A K
Sbjct: 308 VYEMKPLSNDDSRQLFCKRIFDSNDDCPGDLCGVTEKILKKCGGVPLAIITTACLLASKP 367
Query: 343 EKTQKFLEFHKQKSKGEKQDGTTNKMTPLIGALSVEDL 456
++++ + +K S G + + + M ++ +LS DL
Sbjct: 368 RNSEEWDKVNKSISLGLENNLDVDNMRKIL-SLSYNDL 404
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.9 bits (59), Expect = 7.8
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Frame = +1
Query: 337 KVEKTQKFLEFHKQKSKGEKQDGTTNKMTPLIGALSVEDLKQS------NKNSETAKSSP 498
+VEK + + K++S E TT+ + L+G S E ++ K+ + SP
Sbjct: 140 EVEKRKPLILHLKKRSTKELSTDTTSSKSGLLGKSSEEKQEKHGSALKVKKHLHPMELSP 199
Query: 499 -----SPERQHGDTKISKQKPVQPVLKKSPLDMKLMEAMSLDEFAITEKVDKNLLGTSP 660
+ H D+K S+ K VQ + D + + SL+ K+L G +P
Sbjct: 200 KKYKNKKQHNHRDSKRSEAKKVQYLASDVDSDSSMEPSTSLEHSESPPPKRKSLDGRTP 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,763,188
Number of Sequences: 37544
Number of extensions: 288074
Number of successful extensions: 799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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