Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28m16
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 76 6e-15
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 73 6e-14
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 57 3e-09
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 56 4e-09
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 36 0.006
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 35 0.014
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 32 0.025
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.52
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.1
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 3.7
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 6.4
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 8.5
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 75.8 bits (178), Expect = 6e-15
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Frame = -2
Query: 636 LTRQLLIGYRVYL*N--LSSIF-RTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLV 466
L R LL R+ L + +S+ TD +QQTIR+ F T+LT+AHR+NT+MDSDR+LV
Sbjct: 1373 LARVLLTSTRILLLDEATASVHAETDAIVQQTIRKRFKDRTILTVAHRINTVMDSDRILV 1432
Query: 465 MSTGEVAEFDHPYILMSDPNSHLSSMVRETG 373
+ G+V EFD L+ + +S S+ +E+G
Sbjct: 1433 LDHGKVVEFDATKKLLENKDSMFYSLAKESG 1463
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 72.5 bits (170), Expect = 6e-14
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Frame = -2
Query: 678 EATANVDP-Q*VLYQLTRQLLIGYRVYL*NLSSI---FRTDNFIQQTIRRAFASCTVLTI 511
E AN+ Q L LTR LL RV L + ++ TD +Q+TIR F T+LTI
Sbjct: 1356 EGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIRERFNDRTILTI 1415
Query: 510 AHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVRETG 373
AHR+NT+MDS+R+LV+ G+V EFD L+ + S S+ +E+G
Sbjct: 1416 AHRINTVMDSNRILVLDHGKVVEFDSTKKLLENKASLFYSLAKESG 1461
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = -2
Query: 570 DNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSS 391
D IQ+T+R AF T+L IAHRL TI+D D+V+V+ G + E+ P +L + N H
Sbjct: 1391 DQKIQKTLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEYGPPAVLYHN-NGHFRR 1449
Query: 390 MVRETG 373
M +G
Sbjct: 1450 MCDGSG 1455
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 56.4 bits (130), Expect = 4e-09
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = -2
Query: 573 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHP 430
TD IQQ +R AF TVL IAHR+ TI+D D+VLV+ +G+ EF P
Sbjct: 1359 TDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSP 1406
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 573 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 442
++ +Q+ + A T + IAHRL++I D+D + V G +AE
Sbjct: 1293 SEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAE 1336
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = -2
Query: 531 SCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVR 382
S T +TIAH+L TI +D+++V+ G+V E + +S P ++ ++R
Sbjct: 670 SMTTITIAHKLATIRRADQIIVVGDGKVLE-QGSFERLSRPGTNFYKLMR 718
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 32.3 bits (70), Expect = 0.074
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = -2
Query: 561 IQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 442
+++TI+ SCTVL I H+ + + +DR++VM +G V E
Sbjct: 1274 LEKTIQNL--SCTVLIITHQPSLMKLADRIIVMDSGIVKE 1311
Score = 26.6 bits (56), Expect(2) = 0.025
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 573 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 442
T N + IR T L I H ++ I + + VLV+ G + +
Sbjct: 605 TKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKGHLIQ 648
Score = 25.8 bits (54), Expect(2) = 0.025
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 711 ILRSNKILIMDEATANVDP 655
+LR +ILI+DE T+ +DP
Sbjct: 585 LLRDTEILILDEPTSALDP 603
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.5 bits (63), Expect = 0.52
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Frame = +2
Query: 80 FIKNVTKMRVLLRIKWVVVKADAPMITGKCSSMTTRFMXXXXXXXXXQYSWRTDYFVVIT 259
+IKN + VLL+ W V DA GK ++ ++ +YSW DY
Sbjct: 2365 YIKN--ESGVLLKF-WQVNPIDAS--EGKNNTALLKY-HDIPPHSEVKYSW--DYPCCAN 2416
Query: 260 RADVSCVGEIKCLKTILE-ALLWKYASLATSNNFKLFFSPVSRTILER*LLGSDIRMYG* 436
+ C G+ KCL T+ E L + SNN K + L + L+ D Y
Sbjct: 2417 KEIALCYGDQKCLTTLAEIGPLSPFKFTDASNNTKFISRDIVANGLSKILILKD---YDP 2473
Query: 437 SNSATSPVLITRTRSE 484
S + P + ++ +E
Sbjct: 2474 SKAVRKPKIYSKVSTE 2489
>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 143
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 124 MGCCKGGCTNDNWEVFIDD 180
+ CC+ GC W+V+ DD
Sbjct: 62 LNCCQSGCAICVWDVYADD 80
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 338 KMRISKVMLQVSFLSILFHQHK 273
+M + K + +SF+S+LF++HK
Sbjct: 582 EMGLGKTVQVISFISVLFYRHK 603
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 285 SPTQETS--ARVMTTK*SVRQEYCYYDKPDNKPMNLV 181
SPT+E S V TT S +Q + PDNKP ++V
Sbjct: 326 SPTKEKSQWGSVSTTGVSNQQNHPAAWNPDNKPQSIV 362
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 230 WRTDYFVVITRADVSCVGEIKCLKTILEALL 322
W Y + R DV V E+K +++ILE L+
Sbjct: 138 WPVSYRKHVQRQDVFTVHELKRIESILEDLI 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,853
Number of Sequences: 5004
Number of extensions: 64663
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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