Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m15
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   2.4  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    26   3.1  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   3.1  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.1  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   5.5  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   9.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   9.5  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   9.5  

>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -1

Query: 230 HLNLSTPALFSDPPIGTEHCDWLYGIFGHETSCTRYWTCWNGTATEQLCIGGLLYNENA 54
           H  LS  AL+S    GT     L  + GHE++      C +   TE++ +  L+YNE A
Sbjct: 344 HAMLSNGALYSRA--GTS----LISLLGHESNVPVIACCESYKFTERIQLDSLVYNELA 396


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 231 GDNIPDPPLSINPTEIYHKHVGMLPNYAGHVP 326
           GDN+ +  +S++PT+++    G+ PN    +P
Sbjct: 111 GDNMLESVVSVSPTQMHPSLQGLPPNQHPQMP 142


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 209 ALFSDPPIGTEHCDWLYGIFGHETSCTRYWTCWNGTATEQLCIGGLLYNE 60
           AL  DPP+ ++H +     F H     RY     G   +  CIG   Y E
Sbjct: 109 ALRGDPPLNSDHWEGKVSEFEHAVDLVRYIREKYG---DYFCIGVAAYPE 155


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 421 IPFF*DVKSPRSQRLAS-LVSLP*VFPNLKTQPGT*PA*LGN 299
           I  F  V S  ++RLA+ L S+P  +PN    PGT P  L N
Sbjct: 323 IELFVAVHSGFTERLANRLYSMPHEYPNFSLAPGT-PESLSN 363


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 407 RCEVSSEPTLSVSRVVAVGFSESEDAAWHVTCVVGQH 297
           RCE++    ++ S      F  SE+++WH + V+  H
Sbjct: 476 RCEMTDSIIIASSNETIKFFDLSEESSWHNSRVLTWH 512


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = -3

Query: 282 GRSQWDLWIMEDQVYYLPS*SVNACFIFRSPNRHGALRLAVRYLWP 145
           G   W LW  + ++Y LP  +    +   + + H  + +A   + P
Sbjct: 636 GNLSWKLWPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVP 681


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = -3

Query: 282 GRSQWDLWIMEDQVYYLPS*SVNACFIFRSPNRHGALRLAVRYLWP 145
           G   W LW  + ++Y LP  +    +   + + H  + +A   + P
Sbjct: 636 GNLSWKLWPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVP 681


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -1

Query: 113 WNGTATEQLCIGGLLYNENAHSC--DWPY*SRQNTQIS 6
           WN   T  L   G+ YN N  +   D PY  +  T +S
Sbjct: 347 WNAEVTAGLMYSGIAYNYNLKNATEDSPYQIKLGTSMS 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,378
Number of Sequences: 5004
Number of extensions: 37413
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)