Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m15
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0113 + 1410151-1411416                                           28   4.2  
02_01_0210 + 1402037-1402066,1402449-1402544,1402611-1403033,140...    28   5.5  
10_05_0061 - 8690637-8691072,8691370-8691464                           27   7.3  
08_02_0944 + 22868885-22870387                                         27   9.7  

>10_01_0113 + 1410151-1411416
          Length = 421

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 213 R*QIKMGDNIPDPPLSINPTEIYHKHVGMLPNYAGH---VPGCVFRFGKTYGNDTRDAKR 383
           R ++ M D  PD P  +  T    KHVG+   Y G+   V   V R G   G D  +A R
Sbjct: 258 RTRVVMSD--PDAPTVLAITVNSRKHVGVKDGYYGNCATVHMAVARSGAVAGGDMTEAVR 315

Query: 384 WLR 392
            +R
Sbjct: 316 AIR 318


>02_01_0210 +
           1402037-1402066,1402449-1402544,1402611-1403033,
           1403126-1403215,1403330-1403401,1403851-1403980,
           1404172-1404269
          Length = 312

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 434 IYDVNSFLLRCEVSSEPTLSVSRVVA 357
           + DVN  + RC  S+ PT SVS+ +A
Sbjct: 147 LQDVNDAMSRCAASTAPTTSVSQKLA 172


>10_05_0061 - 8690637-8691072,8691370-8691464
          Length = 176

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 113 WNGTATEQLCIGGLLYNENAHS 48
           W+G A  Q C+GG      AH+
Sbjct: 73  WDGAAQAQACVGGATQRREAHT 94


>08_02_0944 + 22868885-22870387
          Length = 500

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 291 VGMLPNYAGHVPGCVFRFGKTYG 359
           VG L N  GH+P  + R  +TYG
Sbjct: 44  VGNLLNLRGHLPPALARLARTYG 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,250
Number of Sequences: 37544
Number of extensions: 251228
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)