Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28m13
(197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 1.8
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 24 3.2
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 23 4.2
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 23 5.6
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 22 9.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 22 9.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 22 9.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 22 9.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 22 9.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 22 9.7
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 22 9.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 22 9.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 22 9.7
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 22 9.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 22 9.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 22 9.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 22 9.7
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 22 9.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 22 9.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 22 9.7
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 54 DEVIMSLPYGPPQPVSP 104
D+V+MS P G P+P P
Sbjct: 523 DQVVMSKPAGGPKPPGP 539
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 23.8 bits (49), Expect = 3.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +1
Query: 31 NYILAFYSMKLSCLCRMVRXS 93
NY++A +S +++C+C + S
Sbjct: 44 NYLMAGHSGRINCVCELATNS 64
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 9 IFDRSPLKLHFSVLFDEVIMSLP 77
+F + PLK++ S + +MSLP
Sbjct: 655 VFQKFPLKVNTSATLSKDLMSLP 677
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 30 KLHFSVLFDEVIMSLPYGPPQPVSP 104
K S +DE + + YGP P+ P
Sbjct: 5 KKKVSYFYDEDVGNYHYGPQHPMKP 29
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 76 GKDMITSSNKTLKCNFSG 23
G DMI NKT N+SG
Sbjct: 164 GTDMIHYYNKTYVINYSG 181
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 55 SNKTLKCNFSGDRSK 11
SNK ++ +FS DR+K
Sbjct: 499 SNKNIQISFSSDRTK 513
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 22.2 bits (45), Expect = 9.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 9 IFDRSPLKLHFSVLFDEVIMSL 74
I S +L SVLF+ VIMSL
Sbjct: 82 ISQSSSTELDASVLFEAVIMSL 103
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 72 LPYGPPQPVSPLIRGLRFAFLIA 140
LP G P P+ PL+ + F IA
Sbjct: 154 LPSGTPTPLIPLLVLIEFVSYIA 176
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 45 VLFDEVIMSLPYGPPQPVSPLIRG 116
+L E I+SL P P+ P +RG
Sbjct: 69 ILRGEFIVSLSVQGPPPMDPSMRG 92
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 75 PYGPPQPVSP 104
PYGP QP+ P
Sbjct: 970 PYGPLQPIPP 979
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,208
Number of Sequences: 5004
Number of extensions: 9745
Number of successful extensions: 45
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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