Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m13
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0007 - 13875735-13875826,13876217-13877465                       31   0.13 
11_04_0178 - 14552650-14553293,14557492-14557603                       28   0.91 
06_03_0048 + 15959234-15959590,15959973-15960314                       27   2.8  
08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741     26   4.8  
06_01_0549 + 3907305-3907553,3907894-3908051,3908293-3908587,390...    25   6.4  
06_01_0536 + 3857426-3857674,3858015-3858172,3858414-3858708,385...    25   6.4  
02_02_0556 - 11444512-11445577,11445730-11446007                       25   6.4  
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322...    25   8.5  
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191...    25   8.5  

>02_03_0007 - 13875735-13875826,13876217-13877465
          Length = 446

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 42  SVLFDEVIMSLPYGPPQPVSPLIRGLRFAFL 134
           S   D  IM LP  PP  + PL  GLR+AFL
Sbjct: 292 SETLDLPIMELPPRPPLELKPLPPGLRYAFL 322


>11_04_0178 - 14552650-14553293,14557492-14557603
          Length = 251

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 54  DEV-IMSLPYGPPQPVSPLIRGLRFAFL 134
           DE+ IM LP  PP  + PL  GL +AFL
Sbjct: 187 DELPIMELPPRPPLELKPLPEGLCYAFL 214


>06_03_0048 + 15959234-15959590,15959973-15960314
          Length = 232

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 63  IMSLPYGPPQPVSPLIRGLRFAFL 134
           I+  P  PP  + PL +GLR+AFL
Sbjct: 172 IIEPPPRPPIALKPLPQGLRYAFL 195


>08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741
          Length = 530

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 54  DEVIMSLPYGPPQPVSPLIRGLRFAFLIAG 143
           D  IM  P  PP  + PL   LR+AFL  G
Sbjct: 449 DLPIMEPPPRPPLELKPLPPSLRYAFLHNG 478


>06_01_0549 +
           3907305-3907553,3907894-3908051,3908293-3908587,
           3909088-3909339
          Length = 317

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 151 YIIPAIKKANLKPLINGETGXGGPYGKDMITSSNKTL 41
           Y +P  +K     L+NG+      YG DM+ S  + L
Sbjct: 98  YKLPLEEKQKYSNLVNGKDFRIEGYGNDMVVSEKQIL 134


>06_01_0536 +
           3857426-3857674,3858015-3858172,3858414-3858708,
           3859209-3859460
          Length = 317

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 151 YIIPAIKKANLKPLINGETGXGGPYGKDMITSSNKTL 41
           Y +P  +K     L+NG+      YG DM+ S  + L
Sbjct: 98  YKLPLEEKQKYSNLVNGKDFRIEGYGNDMVVSEKQIL 134


>02_02_0556 - 11444512-11445577,11445730-11446007
          Length = 447

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 84  PPQPVSPLIRGLRFAFL 134
           PP  + PL +G+R+AFL
Sbjct: 256 PPHELKPLPQGIRYAFL 272


>03_06_0124 -
           31830797-31831371,31831510-31831532,31832143-31832271,
           31833287-31834842
          Length = 760

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 51  FDEVIMSLPYGPPQPVSPLIRGLRFAFLIAGIIYA 155
           +  + +SLP  P    SP  +G+++ +++AG++ A
Sbjct: 274 YKRIGVSLPEPPNALPSPSKKGVKWKYVLAGVLAA 308


>01_06_1397 -
           37017468-37017561,37017763-37017836,37019128-37019193,
           37019543-37019623,37019735-37019943,37020096-37020192,
           37020497-37020514,37020597-37020727,37021040-37021088,
           37021450-37021539,37021616-37021721,37021815-37021885,
           37021963-37022037,37022059-37022120,37022677-37022887,
           37023599-37024069,37024387-37024719
          Length = 745

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 12  FDRSPLKLHFSVLFDEVIMSLPYGP 86
           FD + L+  F ++++  ++ LPY P
Sbjct: 410 FDENLLRKVFELMYENELLDLPYAP 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,494,532
Number of Sequences: 37544
Number of extensions: 62136
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)