Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m13
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40412-4|AAV28342.1|  618|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      25   5.6  
AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical...    25   9.8  

>U40412-4|AAV28342.1|  618|Caenorhabditis elegans Hypothetical
           protein F46G11.1 protein.
          Length = 618

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 106 NGETGXGGPYGKDMITSSNKTLKCNFSGDRSKINH 2
           NG+T     Y  D+ T   +TL C+F     KI H
Sbjct: 335 NGKTTFLCEYSLDLFTQGVRTLFCSFEMPEKKILH 369


>Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical
           protein K05D4.2 protein.
          Length = 338

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 42  SVLFDEVIMSLPYGPPQPVSPLIRGLRFAFLIAGIIYA 155
           SV+ + ++++L  G P  V    + L F+F   G++Y+
Sbjct: 21  SVILNVILLTLIKGMPNKVFGNYKYLMFSFSALGVVYS 58


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 12   FDRSPLKLHFSVLFDEVIMSLPYGPPQPVSPLIRG 116
            FD    KL  S+   +  ++ P  PP P+SP+ RG
Sbjct: 1699 FDNISSKLRSSLAISK--LAPPPRPPNPISPINRG 1731


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 12   FDRSPLKLHFSVLFDEVIMSLPYGPPQPVSPLIRG 116
            FD    KL  S+   +  ++ P  PP P+SP+ RG
Sbjct: 1699 FDNISSKLRSSLAISK--LAPPPRPPNPISPINRG 1731


>Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical
           protein R04F11.2 protein.
          Length = 107

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 84  PPQPVSPLIRGLRFAFLIAGIIY 152
           P   +SPLIR  R+A L  G++Y
Sbjct: 16  PTVTISPLIRFGRYAALSLGVVY 38


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 12   FDRSPLKLHFSVLFDEVIMSLPYGPPQPVSPLIRG 116
            FD    KL  S+   +  ++ P  PP P+SP+ RG
Sbjct: 1699 FDNISSKLRSSLAISK--LAPPPRPPNPISPINRG 1731


>AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical
           protein C18G1.1 protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 118 KPLINGETGXGGP 80
           +PLI GE G GGP
Sbjct: 117 RPLIEGEPGAGGP 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,933,438
Number of Sequences: 27780
Number of extensions: 55759
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)