Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m13
         (197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   5.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   7.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    18   9.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 75  PYGPPQPVSP 104
           PYG  +P+SP
Sbjct: 324 PYGYVKPISP 333


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 123  FAFLIAGIIYARGKXKL 173
            F F   G+++ +GK +L
Sbjct: 952  FGFEQRGLVFVKGKGQL 968


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 72  LPYGPPQPVSPL 107
           L +GPP P  PL
Sbjct: 435 LIHGPPLPPLPL 446


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 72  LPYGPPQPVSPL 107
           L +GPP P  PL
Sbjct: 435 LIHGPPLPPLPL 446


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 112 LINGETGXGGP 80
           +I  +TG GGP
Sbjct: 90  VITNKTGNGGP 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,867
Number of Sequences: 438
Number of extensions: 615
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)