Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28m11
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 30 0.35
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 28 1.1
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 4.3
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 26 4.3
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 25 7.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.5
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.5
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 7.5
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 25 9.9
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 9.9
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 29.9 bits (64), Expect = 0.35
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 354 TLISGLGSPVSLVCGCLWNALTLKF*LKSTLIQEIGSWP----LSGSNGQA-SGNW 506
T + G G+ + + CGC+W A+ L T +++ L G NG+ G W
Sbjct: 496 TSVIGYGNVMWIFCGCMWGAIFFTLLLPETKMRDADEIDREEVLRGGNGKTHQGRW 551
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 123 FLIYKKNHVWNLSYIFILIDMYIITQ 46
FL YK VWN+ + FIL +Y+ +
Sbjct: 252 FLSYKSLFVWNVLFAFILPRLYVCNE 277
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 323 CHAKLIRSFLYTHFWPREPSVVGLWMSLECPYLEVLTEKYSN 448
C K++RSF Y F+P + L M C ++ L EK S+
Sbjct: 1232 CPGKVVRSFQYQEFFPSLCNSNDLQMESVC--MKFLREKLSH 1271
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 354 TLISGLGSPVSLVCGCLWNALTLKF*LKST 443
T I G G+ + + CGC+W + L T
Sbjct: 508 TSIIGYGNVMWIFCGCMWGGILFTLLLPET 537
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 543 FQGLTVLATQTPANFRSPVRWIRSKAKNRSPE 448
F +T L T TP R V W +KAK + E
Sbjct: 146 FMAVTGLQTNTPTLARDTVPWRTAKAKYATNE 177
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 596 ASLVLSRYCEPILPIP*FSKV*PY*LRKLLPISARLSVGSAQRPR 462
AS S Y P + +P S + P +L P+S+RL SA RP+
Sbjct: 1026 ASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQ 1070
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 144 IVQYIYIFLIYKKNHVWNLSYIFILIDMYII 52
IVQ+ +F +Y KN+ +N + F+ +D+ II
Sbjct: 902 IVQFSGVFFLYLKNYNFNDNQ-FLFMDLLII 931
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 566 AHNTDSKPERHRMYFCAHCLKSPNLFAKYNVDYI 667
A++T S + H + ++C SP+LF K+ D +
Sbjct: 55 AYHTTSVLKHHNVSNTSYCNLSPSLFIKFAEDVL 88
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +3
Query: 354 TLISGLGSPVSLVCGCLWNALTLKF*LKST 443
T + G G+ + + CGC+W + L T
Sbjct: 507 TGVIGYGNVMWIFCGCMWGGILFTLLLPET 536
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 PTDRRAEIGRSLRS*YGQTLENQGIGRMGSQYRLKTREAPH 603
P RA++ R+ +S +ENQG R ++ TRE H
Sbjct: 315 PVPHRADLSRTQKSELFPYIENQGNLRDWNEEIQSTREMDH 355
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 245 CDVCLYPTDKKPCFDLRNVSIEFGNQCHAKL 337
C CL +K+ C++L N S+ Q + L
Sbjct: 949 CKACLLQGNKELCYNLLNESLSLHEQIYGVL 979
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,140
Number of Sequences: 5004
Number of extensions: 59004
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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