Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m11
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0979 + 21389457-21389469,21390053-21390139,21390253-213903...    32   0.36 

>04_03_0979 +
           21389457-21389469,21390053-21390139,21390253-21390359,
           21390652-21390768,21391154-21391199,21392518-21392591,
           21392785-21392838,21392926-21393030,21393126-21393184,
           21393273-21393483,21393640-21393699
          Length = 310

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 177 RNPLLKIWRACIVQYIYI-FLIYKKNHVWNLSYI 79
           RN  LK W+ C VQY Y+  ++YK  +V   +YI
Sbjct: 100 RNACLKTWQVCTVQYWYLGQILYKSLYVSRNTYI 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,881
Number of Sequences: 37544
Number of extensions: 350991
Number of successful extensions: 829
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)