Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m11
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr...    29   2.3  
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro...    29   2.3  
Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical p...    28   5.3  

>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
           protein F52E10.1 protein.
          Length = 1201

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 299 VSIEFGNQCHAKLIRSFL-YTHFWPREPSVV 388
           V    G +CH  L+   L Y H+WPR   +V
Sbjct: 653 VCFHCGTRCHYTLLHDHLDYCHYWPRNKRLV 683


>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
           protein protein.
          Length = 1203

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 299 VSIEFGNQCHAKLIRSFL-YTHFWPREPSVV 388
           V    G +CH  L+   L Y H+WPR   +V
Sbjct: 655 VCFHCGTRCHYTLLHDHLDYCHYWPRNKRLV 685


>Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.9 protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 254 CLYPTDKKPCFDLRNVSIEFGNQ 322
           CLYP D++ C DLR  SI + NQ
Sbjct: 449 CLYPHDRQEC-DLRISSIAYSNQ 470


>Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical
           protein C55A1.8 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 332 KLIRSFLYTHFWPREPSVVGLWMSLECPYLEVLTEKYSNSGDRFL 466
           ++ +SF    FW  +  ++G +M+   PY  ++T  Y++   +F+
Sbjct: 68  EIFQSFFAMQFWNIQ-LIIGEYMTFRIPYTGLVTSFYASENPQFM 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,119,371
Number of Sequences: 27780
Number of extensions: 330084
Number of successful extensions: 927
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)