Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m11
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.6  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.6  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   6.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 305 WIHSAGRNTVSCQLGKG 255
           WIH   R+ V+C L +G
Sbjct: 369 WIHHLARHAVACFLTRG 385


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 541 PRSDRISYANSCQFPLACPLDPL 473
           P+SD  S + S + P++  +DP+
Sbjct: 445 PQSDSSSSSRSAESPMSVQVDPM 467


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 79  IHTNRYVHNYSN 44
           IH N Y +NY+N
Sbjct: 89  IHNNNYKYNYNN 100


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 79  IHTNRYVHNYSN 44
           IH N Y +NY+N
Sbjct: 89  IHNNNYKYNYNN 100


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 79  IHTNRYVHNYSN 44
           IH N Y +NY+N
Sbjct: 90  IHNNNYKYNYNN 101


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 79  IHTNRYVHNYSN 44
           IH N Y +NY+N
Sbjct: 90  IHNNNYKYNYNN 101


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 79  IHTNRYVHNYSN 44
           IH N Y +NY+N
Sbjct: 90  IHNNNYKYNYNN 101


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 79  IHTNRYVHNYSN 44
           IH N Y +NY+N
Sbjct: 90  IHNNNYKYNYNN 101


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 400 HPQTNDTGLPRP 365
           HP+ +D G PRP
Sbjct: 123 HPEEDDGGQPRP 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,115
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)