Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m08
         (140 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871           28   1.2  
09_03_0192 + 13344558-13344942,13345038-13345591                       26   4.8  

>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
          Length = 177

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 68  GYCXPVCSPPDXRPICGPASPLLC 139
           G C P C PP   P C P  PL C
Sbjct: 128 GICPPPCPPPCPLP-CPPPCPLPC 150


>09_03_0192 + 13344558-13344942,13345038-13345591
          Length = 312

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 80  PVCSPPDXRPICGPASPLL 136
           P+C  P   P+C   SPLL
Sbjct: 162 PLCIEPPSSPVCNAPSPLL 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,138
Number of Sequences: 37544
Number of extensions: 29180
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)