Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m08
         (140 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   0.44 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   1.8  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    18   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    18   9.5  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 0.44
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 71  YCXPVCSPPDXRPICGPASPLL 136
           +C P C P    P     SPLL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPLL 64


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
 Frame = +2

Query: 71  YCXPVCSPPDXRP-IC--GPASPLLC 139
           +C P C P    P  C   P+  LLC
Sbjct: 44  FCLPFCGPNVINPFFCDMSPSLSLLC 69


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 104 DXPEVNRLVDN 72
           D  +VNRLV+N
Sbjct: 92  DSEQVNRLVNN 102


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 66  WVIVXQSVHLRXVV 107
           W++V  SVH+  +V
Sbjct: 569 WILVMVSVHVVALV 582


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 95  PDXRPICGPASPL 133
           P  RP+ GP   L
Sbjct: 884 PSPRPLVGPCKAL 896


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,042
Number of Sequences: 438
Number of extensions: 287
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)