Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28m06
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom... 30 0.35
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 27 1.9
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 4.4
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 5.8
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 7.6
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 7.6
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.6
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 22 8.0
>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 177
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 222 NVDPKTLSWLPWLTHYANTSGTKVLNAIDYTGESLANFFG--ITTPKYQLEIDEYERLKE 395
N +P+ S PWL + + + +A+ Y G N FG ++T + + + E
Sbjct: 11 NNNPELKSNFPWLADRIHEGRSSIFHALGYVGLKTENAFGWFLSTERKTISTAKNEVFSS 70
Query: 396 EKKKM 410
+++K+
Sbjct: 71 DERKL 75
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Frame = -3
Query: 638 DDTIRNCLYIQCL*LNIWFTWLNFRCGFLNILH*NH---AAYFSFISGFLSC---YIFSW 477
+ TI C + L ++ W N+ FL ++H A Y S+ F SC +
Sbjct: 365 EPTIGACCAMSFLFYITFYCWDNYYYSFLQVVHYTSITAAGYISYTYSFTSCATGFFLGI 424
Query: 476 LI*H*RNITTRILWY 432
LI +T R WY
Sbjct: 425 LI----RLTKRYKWY 435
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 357 YQLEIDEYERLKEEKKKMEDESAGWVPKNSGGDIPLV 467
Y + E ER +EK K+ED SA + + G P+V
Sbjct: 158 YLQSVFEEERDTKEKAKIEDLSADVIMSDLGPPFPMV 194
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 544 SILRKPHLKLSQVNQMFNY 600
+IL +PHL++S +Q++NY
Sbjct: 619 AILYRPHLRMSICSQLWNY 637
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 372 DEYERLKEEKKKMEDESAGWVPK 440
D+YE++KEE K++ E ++ K
Sbjct: 192 DDYEKIKEENKRLYKERKSFLSK 214
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +3
Query: 258 LTHYANTSGTKVLNAIDYTGESLANFFGITTPKYQLEIDEYERLKEEKKKMEDE 419
+T + +G ++A+D +G+ I K +L ++ ER+ +E ++ +E
Sbjct: 503 VTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEE 556
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 510 YEAEVCCMVLMKYIKKTTSKIKPSEPNV 593
+ E C +I+K S++ PS+PNV
Sbjct: 284 FALESLCFSPAPFIQKVLSRLLPSDPNV 311
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 372 DEYERLKEEKKKMEDESAGWVPKNSGGDI 458
D R K KM D+S VP+N G D+
Sbjct: 2633 DSVPRSKRNTGKMFDDSLELVPENLGNDL 2661
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 21.8 bits (44), Expect(2) = 8.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 518 SFISGFLSCYI 486
SF+ GFL+C+I
Sbjct: 728 SFLCGFLNCFI 738
Score = 21.4 bits (43), Expect(2) = 8.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 584 FTWLNFRCGFLN 549
F+ ++F CGFLN
Sbjct: 724 FSQISFLCGFLN 735
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,694
Number of Sequences: 5004
Number of extensions: 45004
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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