Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28m02
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.3
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 27 3.3
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 4.4
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 4.4
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.8
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 5.8
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 25 7.7
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 7.7
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 25 7.7
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 7.7
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 406 LSSCPRSNVFRVMCDKYERK 347
+SSCP SN F + +YER+
Sbjct: 88 ISSCPSSNAFASLMCRYERQ 107
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 105 SCVDVCPDWMVVQVSNCSESYWRARRTCEHPEEVLVGTIC 224
+C V V V ++ YWR R + EEVL+ +C
Sbjct: 113 NCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEVLLEALC 152
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 4.4
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 268 LKPDTATTWITVQRNMDSRSQITPTMVFSHICHT---SLGKHCSLDSWIKNIVKPNRSKS 438
LK +A + + +D I P + C SL +L++ KN+ + + S
Sbjct: 114 LKTVSAALLVCLNIGVDPPDVIKPNPAAKYECWIDPFSLPASKALEAIGKNLQQQYETLS 173
Query: 439 MNSK*KMYLFPMYQECSLLCMLMASRCSLKHDSSITH 549
M ++ + YL P +E LC + R + K + + H
Sbjct: 174 MRTRYRHYLDPAIEEVKKLC--IGQRRNAKEERILFH 208
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +3
Query: 57 SCYNKSTVFNCLWHNDSCVDVCPDWMVVQVS----NCSESYWRARRTCEHPE--EVLVGT 218
+C N + +CL H +S + W + +S N SE+ W R H + E++V +
Sbjct: 616 ACLNPQVLSHCLSHLNSPDSLLRQWACLCISQLWENYSEAKWSGTRDNAHVKLAEIIVDS 675
Query: 219 I 221
+
Sbjct: 676 V 676
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 646 TFITIYFWFLLSCVSPSLKSI 584
+ + IY W+L+ C S S+ S+
Sbjct: 12 SLVLIYLWYLVDCTSFSMNSV 32
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 548 WVIEESCFNEQRLAISMHSSEH 483
W++ SCFN R+A S++ E+
Sbjct: 513 WMLGNSCFNRARIAHSIYHWEY 534
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 373 LGKHCSLDSWIKNIVKPNRSKSMN 444
L +HC W K+ VK ++KS N
Sbjct: 72 LNEHCQRSKWEKSDVKVRQTKSKN 95
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 360 LSHITRKTLLLGQLDKKHC*T 422
+S I +KT L+ LD +HC T
Sbjct: 376 VSEIAKKTNLVNDLDNRHCLT 396
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +3
Query: 444 FKVEDVFVPDVPGMFTTMHANGKPLFIEARFFNNPLHYAKIMGYDKPMDFKLGE 605
+K +D PDV T+H A + N H +G D + + +GE
Sbjct: 610 YKKKDALRPDVSEKVFTVHVRANKRLTPAEYNRNIFHIEFDLG-DSGLTYDIGE 662
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 349 FSHICHTSLGKHCSLDSWIKNIVKPNRSKSMNS 447
++ + +GK C LD KN+VK + + NS
Sbjct: 185 YNELVRDLIGKACDLDPRRKNVVKLSDGERYNS 217
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 12 IMLVWIVFILHLVNASCYNKSTVFNCLWH 98
IML + + L N C S++F CLWH
Sbjct: 396 IMLQHLKVSMELSNP-CAKTSSIFLCLWH 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,825
Number of Sequences: 5004
Number of extensions: 67513
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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