Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m02
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1019 - 23657175-23658047                                         31   0.85 
02_05_0956 - 33064104-33066425                                         29   2.6  
03_05_0860 + 28345120-28345266,28345376-28345424,28345519-283456...    29   4.5  
02_05_1157 - 34533625-34533875,34535279-34536340,34536673-345368...    29   4.5  
02_02_0650 + 12644719-12645060,12645170-12645298,12646101-126465...    29   4.5  
12_01_0615 + 5072267-5073253                                           28   6.0  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     28   6.0  

>08_02_1019 - 23657175-23658047
          Length = 290

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 593 KIHWLIIAHDLCIVQWVIEESCFNEQRLAISMHSSEHS 480
           ++ W I  HD   VQ   EE C     L + MH+++H+
Sbjct: 247 RLGWRIQKHDEAAVQQFCEEVCVKRHVLKVWMHNNKHT 284


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 456 DVFVPDVPGMFTTMHANGKPLFIEARFFNNPLHYAKIM--GYDKPMDFKLGETQESKN 623
           D  +P  P  F   H    P F    + NN L  AK    GY+  +   + ETQESK+
Sbjct: 169 DPSLPPPPSTFRG-HCISTPSFNATAYCNNKLVGAKYFCRGYEAALGHPIDETQESKS 225


>03_05_0860 +
           28345120-28345266,28345376-28345424,28345519-28345641,
           28345759-28345931
          Length = 163

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +3

Query: 186 CEHPEEVLVGTICGFSRCDCPGTTVLDTETGYCYDVDNC 302
           C  P  +  G  CG     CPG    D     C   DNC
Sbjct: 64  CTTPPLLRYGKYCGILYSGCPGEQPCDELDACCMHHDNC 102


>02_05_1157 -
           34533625-34533875,34535279-34536340,34536673-34536837,
           34536993-34537941
          Length = 808

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
 Frame = +3

Query: 63  YNKSTVFNCLWHNDSCVDVCPDWMVVQVSNCS-ESYWRARRTCEHPEEVLVGTICGFS-R 236
           Y  S  FN    +D  V V  DW +  V+NC      R    C       V +  G   R
Sbjct: 241 YRDSADFNRT--DDFAVPVVLDWAIRNVANCDIAKRNRTDYGCRSTNSDCVDSTNGVGYR 298

Query: 237 CDC----PGTTVLDTETGYCYDVDNC 302
           C C     G   LD   G C D+D C
Sbjct: 299 CKCSNGYDGNPYLD---GGCTDIDEC 321


>02_02_0650 +
           12644719-12645060,12645170-12645298,12646101-12646589,
           12646718-12646777
          Length = 339

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 468 EQIHLLL*IHAFRPVWFNNVFYPAVQGAMFS 376
           E++HL+  +   +P W+      AVQGA F+
Sbjct: 207 ERMHLMTFMEVSQPRWYERALVVAVQGAFFN 237


>12_01_0615 + 5072267-5073253
          Length = 328

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -1

Query: 246 DSRTWRIRK--SFPLVLLLDARKFFVLSNKIQSNCSPEPPSSPGR 118
           DSR WR     + P   L    +   L  +  + CS  PPSSP R
Sbjct: 242 DSRIWRSSAPAAVPAATLAATPRAAPLPRRCATRCSSLPPSSPSR 286


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/64 (34%), Positives = 28/64 (43%)
 Frame = +3

Query: 99  NDSCVDVCPDWMVVQVSNCSESYWRARRTCEHPEEVLVGTICGFSRCDCPGTTVLDTETG 278
           N   +D C D     ++ C ES  R R  C  P    V T  GF+ C CP  T+ +   G
Sbjct: 273 NPYLLDGCQD-----INECDES--RFRYPCSVPG-TCVNTPGGFT-CTCPDKTIGNAYNG 323

Query: 279 YCYD 290
            C D
Sbjct: 324 TCGD 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,421,577
Number of Sequences: 37544
Number of extensions: 425633
Number of successful extensions: 1167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)