Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte28m02
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical p...    37   0.015
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    33   0.25 
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   3.1  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U97549-5|AAO91739.1|  212|Caenorhabditis elegans Dopamine recept...    29   4.1  
U97549-4|AAO91736.1|  460|Caenorhabditis elegans Dopamine recept...    29   4.1  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81454-3|CAB03799.2|  378|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z70285-3|CAE17840.1|  214|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    28   7.1  
AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear recep...    28   7.1  
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    28   7.1  
AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical ...    28   7.1  

>Z79756-10|CAL36507.1|   80|Caenorhabditis elegans Hypothetical
           protein F53C11.9 protein.
          Length = 80

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 180 RTCEHPEEVLVGTICGFSRCDCPGTTVLDTETGYCYDVDNCP 305
           RTCE+P  + +  +C  +RC+C    V+D+ T  C D+  CP
Sbjct: 38  RTCENPNPMCI-QMCK-ARCECKQGFVVDSNTKKCIDLKKCP 77


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 120 CPDWMVVQVSNCSESYWRARRTCEHPEEVLVGTICGFSRCDCP 248
           CP    VQ   C         +C++ E+   G++C   +C CP
Sbjct: 327 CPPGFYVQDEQCQAIESEPNESCQNNEKCTKGSVCYNGKCSCP 369


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 120 CPDWMVVQVSNCSESYWRARRTCEHPEEVLVGTICGFSRCDCP 248
           CP    VQ   C         +C++ E+   G++C   +C CP
Sbjct: 327 CPPGFYVQDEQCQAIESEPNESCQNNEKCTKGSVCYNGKCSCP 369


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 186 CEHPEEVLVGTICGFSRCDCP-GTTVLDTETGYCYDVDN--CPTKHGL*VPNHSYN 344
           C+ P++ L  + C  S C CP G+T ++   GYC    N  C +   L + N  YN
Sbjct: 466 CQFPQQCLGNSQCMNSMCQCPTGSTNVN---GYCQGGSNGQCNSNQVL-INNQCYN 517


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 171 RARRTCEHPEEVLVGTICGFSRCDCPGTTVLDTETGYCYDVDNCPTKHG 317
           R    C++  + L G  C    C C  T +L     YCY+  N P + G
Sbjct: 103 RVGDVCQYNTDCLSGMYCATGLCSCLSTYIL--RESYCYEKVN-PNQPG 148


>U97549-5|AAO91739.1|  212|Caenorhabditis elegans Dopamine receptor
           protein 1, isoformd protein.
          Length = 212

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -1

Query: 297 YPRRSSIRFQCPEPLFRDSRTWRIRKSFPLVLLLDARKFFVLSNKIQSNCSPEPPSSPGR 118
           Y RRS+       P   D +T    K   +   + ++  F+   + ++  SP+ P +P  
Sbjct: 7   YSRRSTTTTTTATPRRGDKKTSSQNKVESIRTSIFSKLNFLCPTRFKNQRSPQDPHTPAA 66

Query: 117 HRRKN 103
           H R N
Sbjct: 67  HNRSN 71


>U97549-4|AAO91736.1|  460|Caenorhabditis elegans Dopamine receptor
           protein 1, isoforma protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -1

Query: 297 YPRRSSIRFQCPEPLFRDSRTWRIRKSFPLVLLLDARKFFVLSNKIQSNCSPEPPSSPGR 118
           Y RRS+       P   D +T    K   +   + ++  F+   + ++  SP+ P +P  
Sbjct: 255 YSRRSTTTTTTATPRRGDKKTSSQNKVESIRTSIFSKLNFLCPTRFKNQRSPQDPHTPAA 314

Query: 117 HRRKN 103
           H R N
Sbjct: 315 HNRSN 319


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 117  VCPDWMVVQVSNCSESYWRARRTCEHPEEVLVGTICGFSRCDCPGTTVLDTET 275
            +CP  +V+    C  S    +  CEH  E     +C   + DCP    L   T
Sbjct: 1782 LCPYGLVLDSIGCPRSECICKSACEH-VECPNAQVCILRKADCPNKWCLPVPT 1833


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/72 (27%), Positives = 24/72 (33%)
 Frame = -1

Query: 339  RSDLGPRVHVSLDSYPRRSSIRFQCPEPLFRDSRTWRIRKSFPLVLLLDARKFFVLSNKI 160
            RS   P  HV +  Y  RS            DS               DA +  V S  +
Sbjct: 2985 RSTSSPNNHVRMRPYQPRSDTASNATLSYTTDSERTSTATDLSSSYTSDASESTVQSTVV 3044

Query: 159  QSNCSPEPPSSP 124
                SP+PP SP
Sbjct: 3045 NKRRSPQPPVSP 3056


>Z81454-3|CAB03799.2|  378|Caenorhabditis elegans Hypothetical
           protein B0391.5 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 36  ILHLVNASCYNKSTVFNCLWHNDSCVDVCPDWMVVQVSNCSESYWRARRTC 188
           ILH V+ +  +    F  + H +  + +C DW ++  S+ +  Y R    C
Sbjct: 94  ILHKVSQTLRSVVGDFEVICHKEVSLRLCRDWSILNFSHHNVKYQRCDGGC 144


>Z70285-3|CAE17840.1|  214|Caenorhabditis elegans Hypothetical
           protein F56C4.3 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 388 SLDSWIKNIVKPNRSKSMNSK*KMYLFPMYQECSLLCMLMASRCSLKHDSSITH 549
           SLD  + N+ + +    +N K + Y + ++ ECS+ C+  A    + +D  + H
Sbjct: 92  SLDVILDNLGRRHGKLEVNGKFRSYYWSVFLECSIYCLRHAFSKRM-NDKEVDH 144


>U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical
           protein C50F2.3 protein.
          Length = 855

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 406 LSSCPRSNVFRVMCDKYER 350
           ++ CP  N +R +CD YER
Sbjct: 90  VNKCPTDNSWRALCDTYER 108


>Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical
           protein F57A10.5 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 144 PEPPSSPGRHRRKNHYAISN*IQWIYYNMM 55
           P+PPS PG+ R   H    N  QW +YN++
Sbjct: 236 PKPPS-PGKPRDSQHS--QNIKQWFFYNLL 262


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 240 DCPGTTVLDTETGYCYDVDNCPTKHGL*VPNHSYNG 347
           DCPG  V +  TG C   +NC   +    P+  Y G
Sbjct: 462 DCPGDLVFNKATGTCDFAENCEKNYM--EPSQIYKG 495


>AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear receptor
           NHR-60 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 144 PEPPSSPGRHRRKNHYAISN*IQWIYYNMM 55
           P+PPS PG+ R   H    N  QW +YN++
Sbjct: 235 PKPPS-PGKPRDSQHS--QNIKQWFFYNLL 261


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 26/129 (20%), Positives = 46/129 (35%)
 Frame = -2

Query: 560 CIVQWVIEESCFNEQRLAISMHSSEHSWYIGNKYIFYFEFMLLDLFGLTMFFIQLSKEQC 381
           C   W+       E    +S  ++  SWY          F  + L  LT++ ++ S +  
Sbjct: 56  CYNDWISRPGTCYEDSCCVSFETAT-SWYYRTAQASQVVFSSMGLVVLTVYALKYSSKHM 114

Query: 380 FPSDV*QI*EKTIVGVIWDLESMFRWTVIHVVAVSGFSVQNRCSGTVAPGESANRSH*YF 201
            PS+V  +    ++ +      M  + V H+         + CS  V     A   + Y 
Sbjct: 115 LPSNVRVLVNIILILMFTHSIDMIIFHVYHIFRSYKAVESDPCSVRVKISFCAPFRYIYS 174

Query: 200 FWMLASSSC 174
           F  L  + C
Sbjct: 175 FCTLGLAFC 183


>AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical
           protein F39G3.6 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 455 FYFEFMLLDLFGLTMFFIQLSKEQCFPSDV*QI*EKT 345
           F F FM L L+  +  FI L   + FPS V +I EK+
Sbjct: 200 FAFNFMFLRLWQFSAGFIALFWTKSFPSQVAKISEKS 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,079,766
Number of Sequences: 27780
Number of extensions: 396152
Number of successful extensions: 1246
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)