Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte28l24
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 34 0.089
AC024798-3|AAP86612.1| 361|Caenorhabditis elegans Hypothetical ... 30 1.1
AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical ... 30 1.1
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 30 1.5
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 30 1.5
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 25 3.4
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 25 3.4
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 25 3.4
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 28 4.4
AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical ... 28 4.4
AC006747-7|AAF60511.1| 331|Caenorhabditis elegans Hypothetical ... 28 4.4
AC006729-5|AAK84599.2| 568|Caenorhabditis elegans Hypothetical ... 28 4.4
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 28 5.9
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 28 5.9
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 28 5.9
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 33.9 bits (74), Expect = 0.089
Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 2/104 (1%)
Frame = +2
Query: 218 PNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEG-CTTYKLSYLPVDGCK 394
P P S CCG P+ PC P P AP C P P K + +P + C
Sbjct: 91 PPPPPASPCCGPSPVPAPCCPPPPAPA--AP--CCPPPPPPTPSPLVCCKQAPVPENPCC 146
Query: 395 NLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPV-CVTXSIRP 523
+ P P+ C T P P CV + RP
Sbjct: 147 QIVAAAMPPPPSAPACCVAAPVPTNPCCQPAPRPAPCVCSAPRP 190
>AC024798-3|AAP86612.1| 361|Caenorhabditis elegans Hypothetical
protein Y48G9A.9b protein.
Length = 361
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 414 RNLRPTLYRAVNLW--KGVPFKSCHTYRTRCA*RXRSGPATTTCGARV 551
+ LR L + N W +GVP + CHT R + R GP C A +
Sbjct: 231 KELRVNLIKWPN-WPDRGVPDEKCHTVPQRLLAQVRHGPCVVHCSAGI 277
>AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical
protein Y48G9A.9a protein.
Length = 352
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 414 RNLRPTLYRAVNLW--KGVPFKSCHTYRTRCA*RXRSGPATTTCGARV 551
+ LR L + N W +GVP + CHT R + R GP C A +
Sbjct: 222 KELRVNLIKWPN-WPDRGVPDEKCHTVPQRLLAQVRHGPCVVHCSAGI 268
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 146 CLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP 256
C C SG R+ + ++G P+ C SC CG P
Sbjct: 322 CKTC-CRSFHSGCREVETLNGKPIPDDQCESCVCGDP 357
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 146 CLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP 256
C C SG R+ + ++G P+ C SC CG P
Sbjct: 322 CKTC-CRSFHSGCREVETLNGKPIPDDQCESCVCGDP 357
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 344 EGCTTYKLSYLPVDGCK 394
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 3.4
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 143 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 226
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 344 EGCTTYKLSYLPVDGCK 394
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 3.4
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 143 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 226
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 25.0 bits (52), Expect(2) = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 344 EGCTTYKLSYLPVDGCK 394
E CTT Y P++GCK
Sbjct: 1163 ENCTTNAWDYHPLNGCK 1179
Score = 21.8 bits (44), Expect(2) = 3.4
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 143 ECLPCPAAGIKSGLRDGKPI-----DGDMRPNC 226
EC PCPA G DG + G+M NC
Sbjct: 1133 ECEPCPAPGQVCDPIDGSCVCPPNTVGEMCENC 1165
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +2
Query: 233 RSCCCGKPPIVKPC---YK--QPKIPESYAPRRCYIKPS 334
+ CCC PP PC Y+ P P SYA Y PS
Sbjct: 34 QQCCCPPPPPPPPCGGGYEAPPPPPPPSYAGGPSYAGPS 72
>AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical
protein Y46H3D.4 protein.
Length = 517
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 4 FRINFFFLFS*NVLKSFQFISYFDIF 81
FR+NFF LFS N + F + F IF
Sbjct: 476 FRLNFFILFSNNSILIFFILKVFVIF 501
>AC006747-7|AAF60511.1| 331|Caenorhabditis elegans Hypothetical
protein Y39A3A.4 protein.
Length = 331
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 459 GVPFKSCHTYRTRCA*RXRSGPATTTCGA 545
GVP + CHT R + R GP C A
Sbjct: 230 GVPDEKCHTVPQRLLAQVRHGPCVVHCSA 258
>AC006729-5|AAK84599.2| 568|Caenorhabditis elegans Hypothetical
protein Y24D9A.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 233 RSCCCGKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGC-TTYKLSYLPV 382
R CC PIV PCY+ K P +R P EGC T S+ P+
Sbjct: 273 RCTCCSSKPIV-PCYENEKCPCFIMNQRMQ-GFQIPREGCGKTEFTSFKPI 321
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 283 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 197
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 365 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 392
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 283 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 197
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 365 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 392
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 283 LLVTRLNNGRFPTAARSAWAVRSHVAVNG 197
+++ L+ G FPT +AWA+ S+V ++G
Sbjct: 274 MIIHLLDRGDFPTQKEAAWAI-SNVTISG 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,985,394
Number of Sequences: 27780
Number of extensions: 393757
Number of successful extensions: 1092
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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